YRC Public Data Repository - Protein Structure Prediction

Protein:	RNT_SHIDS
Organism:	Shigella dysenteriae Sd197
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNT_SHIDS.

Description	E-value	Query Range	Subject Range
RNT_YERPS - Ribonuclease T OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=rnt PE=3 SV=1 RNT_YERPS - Ribonuclease T OS=Yersinia pseudotuberculosis GN=rnt PE=3 SV=1	195.0	[0..1]	[213..1]
gi\|229694272, gi... - gi\|229837906\|ref\|ZP_04458065.1\| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. PEX... gi\|22125847, gi\|... - gi\|22125847\|ref\|NP_669270.1\| ribonuclease T [Yersinia pestis KIM], gi\|21958778\|gb\|AAM85521.1\|AE01379... gi\|229688513, gi... - gi\|229898469\|ref\|ZP_04513615.1\| ribonuclease T (RNase T) [Yersinia pestis biovar Orientalis str. Ind... gi\|229701955, gi... - gi\|229895067\|ref\|ZP_04510244.1\| ribonuclease T (RNase T) [Yersinia pestis Pestoides A], gi\|229701955... gi\|16122605, gi\|... - gi\|218929473\|ref\|YP_002347348.1\| ribonuclease T [Yersinia pestis CO92], gi\|16122605\|ref\|NP_405918.1\|... gi\|45436823, gi\|... - gi\|45441960\|ref\|NP_993499.1\| ribonuclease T [Yersinia pestis biovar Microtus str. 91001], gi\|4543682... gi\|229680644, gi... - gi\|229902309\|ref\|ZP_04517429.1\| ribonuclease T (RNase T) [Yersinia pestis Nepal516], gi\|229680644\|gb... RNT_YERPE - Ribonuclease T OS=Yersinia pestis GN=rnt PE=3 SV=1 gi\|149292120, gi... - gi\|149365707\|ref\|ZP_01887742.1\| ribonuclease T [Yersinia pestis CA88-4125], gi\|149292120\|gb\|EDM42194...	195.0	[0..1]	[213..1]
gi\|238724931, gi... - gi\|77975303\|ref\|ZP_00830839.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	194.0	[0..1]	[213..12]
gi\|165926445, gi... - gi\|165926445\|ref\|ZP_02222277.1\| ribonuclease T [Yersinia pestis biovar Orientalis str. F1991016], gi... gi\|162420848, gi... - gi\|77633721\|ref\|ZP_00795840.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|108811999, gi... - gi\|108811999\|ref\|YP_647766.1\| ribonuclease T [Yersinia pestis Nepal516], gi\|108775647\|gb\|ABG18166.1\|... gi\|165990366, gi... - gi\|166010664\|ref\|ZP_02231562.1\| ribonuclease T [Yersinia pestis biovar Antiqua str. E1979001], gi\|16... gi\|108779636, gi... - gi\|108807723\|ref\|YP_651639.1\| ribonuclease T [Yersinia pestis Antiqua], gi\|108779636\|gb\|ABG13694.1\| ... gi\|165938652, gi... - gi\|89103795\|ref\|ZP_01176359.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|167422151, gi... - gi\|167422151\|ref\|ZP_02313904.1\| ribonuclease T [Yersinia pestis biovar Orientalis str. MG05-1020], g... gi\|167056127, gi... - gi\|167424940\|ref\|ZP_02316693.1\| ribonuclease T [Yersinia pestis biovar Mediaevalis str. K1973002], g... gi\|166211013, gi... - gi\|166211013\|ref\|ZP_02237048.1\| ribonuclease T [Yersinia pestis biovar Antiqua str. B42003004], gi\|1... gi\|167049614, gi... - gi\|167400761\|ref\|ZP_02306267.1\| ribonuclease T [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1...	193.0	[0..1]	[213..12]
gi\|77959189, gi\|... - gi\|77959189\|ref\|ZP_00823211.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc... gi\|77961718, gi\|... - gi\|77961718\|ref\|ZP_00825550.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	193.0	[0..1]	[213..12]
gi\|238792291, gi... - gi\|77979562\|ref\|ZP_00834980.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	193.0	[0..1]	[213..12]
gi\|170024107, gi... - gi\|170024107\|ref\|YP_001720612.1\| ribonuclease T [Yersinia pseudotuberculosis YPIII], gi\|169750641\|gb... gi\|145209763, gi... - gi\|145598067\|ref\|YP_001162143.1\| ribonuclease T [Yersinia pestis Pestoides F], gi\|145209763\|gb\|ABP39... gi\|77629367, gi\|... - gi\|77629367\|ref\|ZP_00791953.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	192.0	[0..1]	[213..12]
RNT_SHIF8 - Ribonuclease T OS=Shigella flexneri serotype 5b (strain 8401) GN=rnt PE=3 SV=1	192.0	[0..1]	[215..1]
gi\|85675063, gi\|... - gi\|89108494\|ref\|AP_002274.1\| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. W3110], gi... gi\|238900868, gi... - gi\|238900868\|ref\|YP_002926664.1\| ribonuclease T (RNase T) [Escherichia coli BW2952], gi\|238863473\|gb... RNT_ECOLI - Ribonuclease T (EC 3.1.13.-) (Exoribonuclease T) (RNase T) - Escherichia coli EG11547 - ribonuclease T (RNase T) / RNase T; RNA processing EG11547 - ribonuclease T (RNase T) / RNase T; RNA processing gi\|169889150, gi... - gi\|170081315\|ref\|YP_001730635.1\| ribonuclease T (RNase T) [Escherichia coli str. K-12 substr. DH10B]...	191.0	[0..1]	[215..1]
gi\|194434706, gi... - gi\|194434706\|ref\|ZP_03066959.1\| ribonuclease T [Shigella dysenteriae 1012], gi\|194417044\|gb\|EDX33160... RNT_SHIBS - Ribonuclease T OS=Shigella boydii serotype 4 (strain Sb227) GN=rnt PE=3 SV=1	191.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDNAQLTGL CDRFRGFYPV VIDVETAGFN AKTDALLEIA AITLKMDEQG WLMPDTTLHF  60
   61 HVEPFVGANL QPEALAFNGI DPNDPDRGAV SEYEALHEIF KVVRKGIKAS GCNRAIMVAH 120
  121 NANFDHSFMM AAAERASLKR NPFHPFATFD TAALAGLALG QTVLSKACQT AGMDFDSTQA 180
  181 HSALYDTERT AVLFCEIVNR WKRLGGWPLP AAEEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.0
Match:	2is3A
Description:	No description for 2is3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits