YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|82776429, gi\|...
Organism:	Shigella dysenteriae Sd197
Length:	220 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|82776429, gi|....

Description	E-value	Query Range	Subject Range
gi\|110805789, gi... - gi\|110805789\|ref\|YP_689309.1\| exodeoxyribonuclease X [Shigella flexneri 5 str. 8401], gi\|110615337\|g...	212.0	[0..1]	[220..1]
gi\|13362022, gi\|... - gi\|15831808\|ref\|NP_310581.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 str. Sakai], gi\|133620... gi\|189372044, gi... - gi\|189372044\|gb\|EDU90460.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC869], gi\|1687882... gi\|189367397, gi... - gi\|189367397\|gb\|EDU85813.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 str. EC4501], gi\|168762... gi\|25511709, gi\|... - pir\|\|F85796 exonuclease X [similarity] - Escherichia coli (strain O157:H7, substrain EDL933), pir\|\|... gi\|217318148, gi... - gi\|217328801\|ref\|ZP_03444882.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 str. TW14588], gi\|2... gi\|15802257, gi\|... - gi\|15802257\|ref\|NP_288281.1\| exodeoxyribonuclease X [Escherichia coli O157:H7 EDL933], gi\|12515897\|g... gi\|13362022, gi\|... - gi\|15831808\|ref\|NP_310581.1\| exodeoxyribonuclease X [Escherichia coli O157:H7], gi\|13362022\|dbj\|BAB3...	211.0	[0..1]	[220..1]
gi\|26108511, gi\|... - gi\|26248108\|ref\|NP_754148.1\| exodeoxyribonuclease X [Escherichia coli CFT073], gi\|26108511\|gb\|AAN807... tr\|A0A0G3HGP2\|A0... - Exodeoxyribonuclease 10 DNA exonuclease X protein OS=Escherichia coli (strain K12) GN=exoX PE=4 SV=1	211.0	[0..1]	[220..19]
gi\|75195909, gi\|... - gi\|75195909\|ref\|ZP_00705979.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	210.0	[0..1]	[220..1]
gi\|56383525, gi\|... - gi\|56479974\|ref\|NP_707706.2\| exodeoxyribonuclease X [Shigella flexneri 2a str. 301], gi\|56383525\|gb\|... gi\|30063256, gi\|... - gi\|30063256\|ref\|NP_837427.1\| exodeoxyribonuclease X [Shigella flexneri 2a str. 2457T], gi\|30041508\|g...	210.0	[0..1]	[220..1]
gi\|81245076, gi\|... - gi\|82543665\|ref\|YP_407612.1\| exodeoxyribonuclease X [Shigella boydii Sb227], gi\|81245076\|gb\|ABB65784...	210.0	[0..1]	[220..1]
gi\|197243915, gi... - gi\|197265660\|ref\|ZP_03165734.1\| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar... gi\|200390618, gi... - gi\|200390618\|ref\|ZP_03217229.1\| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar... gi\|213419003 - gi\|213419003\|ref\|ZP_03352069.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar ... gi\|213426806 - gi\|213426806\|ref\|ZP_03359556.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar ... gi\|16420413, gi\|... - gi\|16765220\|ref\|NP_460835.1\| exodeoxyribonuclease X [Salmonella typhimurium LT2], gi\|16420413\|gb\|AAL... gi\|205332278, gi... - gi\|205332278\|gb\|EDZ19042.1\| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Ken... lcl\|NC_016856.1_... - [gene=exoX] [protein=exodeoxyribonuclease X] [protein_id=YP_005237837.1] [location=1982477..1983175] gi\|29141480, gi\|... - gi\|29141480\|ref\|NP_804822.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typ... gi\|205351180, gi... - gi\|205351180\|gb\|EDZ37811.1\| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Had... gi\|168820696, gi... - gi\|205342565\|gb\|EDZ29329.1\| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar Wel... gi\|25511843, gi\|... - gi\|25511843\|pir\|\|AB0741 exodeoxyribonuclease X (EC 3.1.11.-) [imported] - Salmonella enterica subsp.... gi\|194455682, gi... - gi\|194469318\|ref\|ZP_03075302.1\| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar... gi\|238912063 - gi\|238912063\|ref\|ZP_04655900.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar ... gi\|16760829 - gi\|16760829\|ref\|NP_456446.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Typ... gi\|167993853, gi... - gi\|205328180\|gb\|EDZ14944.1\| exodeoxyribonuclease 10 [Salmonella enterica subsp. enterica serovar 4,[... gi\|62128086, gi\|... - gi\|62180453\|ref\|YP_216870.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Cho... gi\|213648159 - gi\|213648159\|ref\|ZP_03378212.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar ... gi\|213851907 - gi\|213851907\|ref\|ZP_03381439.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar ... gi\|214002650 - gi\|214002650\|ref\|ZP_03413385.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar ... gi\|224468146, gi... - gi\|224583619\|ref\|YP_002637417.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar...	209.0	[0..1]	[217..1]
gi\|187734182, gi... - gi\|75175681\|ref\|ZP_00695887.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	207.0	[0..1]	[220..1]
gi\|56127459, gi\|... - gi\|56413202\|ref\|YP_150277.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar Par... gi\|197093605, gi... - gi\|197362128\|ref\|YP_002141765.1\| exodeoxyribonuclease X [Salmonella enterica subsp. enterica serovar...	206.0	[0..1]	[217..1]
gi\|238789017, gi... - gi\|77972300\|ref\|ZP_00827870.1\| COG0847: DNA polymerase III, epsilon subunit and related 3'-5' exonuc...	183.0	[0..2]	[218..3]

Back

Predicted Domain #1

Region A:
Residues: [1-220]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRIIDTETC GLQGGIVEIA SVDVIDGKIV NPMSHLVRPD RPISPQAMAI HRITEAMVAD  60
   61 KPWIEDVIPH YYGSEWYVAH NASFDRRVLP EMPGEWICTM KLARRLWPGI KYSNMALYKT 120
  121 RKLNVQTPPG LHHHRALYDC YITAALLIDI MNTSGWTAEQ MADITGRPSL MTTFTFGKYR 180
  181 GKAVSDVAER DPGYLRWLFN NLDSMSPELR LTLKHYLENT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.39794
Match:	2p1jA
Description:	No description for 2p1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits