YRC Public Data Repository - Protein Structure Prediction

Protein:	MINE_SHIB3
Organism:	Shigella boydii CDC 3083-94
Length:	88 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MINE_SHIB3.

Description	E-value	Query Range	Subject Range
gi\|88820533, gi\|... - gi\|88857336\|ref\|ZP_01131979.1\| cell division topological specificity factor [Pseudoalteromonas tunic...	135.0	[0..1]	[87..1]
MINE_PECAS - Cell division topological specificity factor OS=Pectobacterium atrosepticum (strain SCRI 1043 / ATCC... MINE_ERWCT - Cell division topological specificity factor OS=Erwinia carotovora subsp. atroseptica GN=minE PE=3 S...	134.0	[0..1]	[87..1]
gi\|205350611, gi... - gi\|205350611\|gb\|EDZ37242.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|168462692, gi... - gi\|195634450\|gb\|EDX52802.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|168820565, gi... - gi\|205342772\|gb\|EDZ29536.1\| cell division topological specificity factor MinE [Salmonella enterica s... MINE_SALNS - Cell division topological specificity factor OS=Salmonella newport (strain SL254) GN=minE PE=3 SV=1 gi\|167993268, gi... - gi\|205328653\|gb\|EDZ15417.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|205331758, gi... - gi\|205331758\|gb\|EDZ18522.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|197289206, gi... - gi\|197289206\|gb\|EDY28573.1\| cell division topological specificity factor MinE [Salmonella enterica s... gi\|205339227, gi... - gi\|205339227\|gb\|EDZ25991.1\| cell division topological specificity factor MinE [Salmonella enterica s... MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis GN=minE PE=3 SV=1 MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis (strain SC-B67) GN=minE PE=3... MINE_SALPA - Cell division topological specificity factor OS=Salmonella paratyphi A GN=minE PE=3 SV=1 MINE_SALPA - Cell division topological specificity factor OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) G... gi\|213580025 - gi\|213580025\|ref\|ZP_03361851.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALTI - Cell division topological specificity factor OS=Salmonella typhi GN=minE PE=3 SV=1 gi\|213609542 - gi\|213609542\|ref\|ZP_03369368.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium GN=minE PE=3 SV=1 gi\|214002609 - gi\|214002609\|ref\|ZP_03413344.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALPC - Cell division topological specificity factor OS=Salmonella paratyphi C (strain RKS4594) GN=minE PE=3... lcl\|NC_016856.1_... - [gene=minE] [protein=cell division topological specificity factor MinE] [protein_id=YP_005237754.1] ... MINE_SALG2 - Cell division topological specificity factor OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) G... MINE_SALEP - Cell division topological specificity factor OS=Salmonella enteritidis PT4 (strain P125109) GN=minE ... gi\|213052595 - gi\|213052595\|ref\|ZP_03345473.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|213426610 - gi\|213426610\|ref\|ZP_03359360.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|197262920, gi... - gi\|197262920\|ref\|ZP_03162994.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALPB - Cell division topological specificity factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... MINE_SALPK - Cell division topological specificity factor OS=Salmonella paratyphi A (strain AKU_12601) GN=minE PE... MINE_SALAR - Cell division topological specificity factor OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86... MINE_SALDC - Cell division topological specificity factor OS=Salmonella dublin (strain CT_02021853) GN=minE PE=3 ... gi\|200390793, gi... - gi\|200390793\|ref\|ZP_03217404.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALHS - Cell division topological specificity factor OS=Salmonella heidelberg (strain SL476) GN=minE PE=3 SV... gi\|194469036, gi... - gi\|194469036\|ref\|ZP_03075020.1\| cell division topological specificity factor MinE [Salmonella enteri... MINE_SALSV - Cell division topological specificity factor OS=Salmonella schwarzengrund (strain CVM19633) GN=minE ... MINE_SALCH - Cell division topological specificity factor OS=Salmonella choleraesuis GN=minE PE=3 SV=1 MINE_SALPB - Cell division topological specificity factor OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)... MINE_SALA4 - Cell division topological specificity factor OS=Salmonella agona (strain SL483) GN=minE PE=3 SV=1 MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium GN=minE PE=3 SV=1 gi\|238912119 - gi\|238912119\|ref\|ZP_04655956.1\| cell division topological specificity factor MinE [Salmonella enteri... gi\|227333438, gi... - gi\|228555198\|gb\|EEK19863.1\| hypothetical protein CIT292_03020 [Citrobacter youngae ATCC 29220], gi\|2... gi\|283785538\|ref... - Cell division topological specificity factor [Citrobacter rodentium ICC168] MINE_SALTI - Cell division topological specificity factor OS=Salmonella typhi GN=minE PE=3 SV=1 MINE_SALTY - Cell division topological specificity factor OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC... gi\|29141536, gi\|... - gi\|29141536\|ref\|NP_804878.1\| cell division topological specificity factor MinE [Salmonella enterica ... gi\|16760706 - gi\|16760706\|ref\|NP_456323.1\| cell division topological specificity factor MinE [Salmonella enterica ...	133.0	[0..1]	[88..1]
MINE_PSEHT - Cell division topological specificity factor OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=m...	132.0	[0..1]	[85..1]
MINE_SODGM - Cell division topological specificity factor OS=Sodalis glossinidius (strain morsitans) GN=minE PE=3...	131.0	[0..1]	[87..1]
MINE_PHOLL - Cell division topological specificity factor OS=Photorhabdus luminescens subsp. laumondii (strain DS... MINE_PHOLL - Cell division topological specificity factor OS=Photorhabdus luminescens subsp. laumondii GN=minE PE...	131.0	[0..1]	[88..1]
MINE_HAHCH - Cell division topological specificity factor OS=Hahella chejuensis (strain KCTC 2396) GN=minE PE=3 S...	130.0	[0..1]	[83..1]
gi\|95109614 - gi\|95109614\|emb\|CAK14315.1\| cell division topological specificity factor MinE [Pseudomonas entomophi... MINE_PSEE4 - Cell division topological specificity factor OS=Pseudomonas entomophila (strain L48) GN=minE PE=3 SV...	129.0	[0..1]	[83..1]
gi\|238788498, gi... - gi\|77973549\|ref\|ZP_00829096.1\| COG0851: Septum formation topological specificity factor [Yersinia fr... gi\|229894792, gi... - gi\|229894792\|ref\|ZP_04509972.1\| cell division topological specificity factor [Yersinia pestis Pestoi... MINE_YERPG - Cell division topological specificity factor OS=Yersinia pestis bv. Antiqua (strain Angola) GN=minE ... gi\|229897497, gi... - gi\|229897497\|ref\|ZP_04512653.1\| cell division topological specificity factor [Yersinia pestis biovar... MINE_YERP3 - Cell division topological specificity factor OS=Yersinia pseudotuberculosis serotype O:1b (strain IP... gi\|229898141, gi... - gi\|229898141\|ref\|ZP_04513290.1\| cell division topological specificity factor [Yersinia pestis biovar... gi\|238710173, gi... - gi\|238751611\|ref\|ZP_04613101.1\| Cell division topological specificity factor [Yersinia rohdei ATCC 4... gi\|238754881, gi... - gi\|238754881\|ref\|ZP_04616231.1\| Cell division topological specificity factor [Yersinia ruckeri ATCC ... gi\|238756990, gi... - gi\|238756990\|ref\|ZP_04618178.1\| Cell division topological specificity factor [Yersinia aldovae ATCC ... MINE_YERPA - Cell division topological specificity factor OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=minE... gi\|238698708, gi... - gi\|238762950\|ref\|ZP_04623917.1\| Cell division topological specificity factor [Yersinia kristensenii ... MINE_YERPN - Cell division topological specificity factor OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=min... gi\|238794477, gi... - gi\|77977706\|ref\|ZP_00833148.1\| COG0851: Septum formation topological specificity factor [Yersinia in... gi\|166210801, gi... - gi\|166210801\|ref\|ZP_02236836.1\| cell division topological specificity factor MinE [Yersinia pestis b... gi\|165991769, gi... - gi\|166009214\|ref\|ZP_02230112.1\| cell division topological specificity factor MinE [Yersinia pestis b... gi\|167420058, gi... - gi\|167420058\|ref\|ZP_02311811.1\| cell division topological specificity factor MinE [Yersinia pestis b... gi\|167401397, gi... - gi\|167401397\|ref\|ZP_02306894.1\| cell division topological specificity factor MinE [Yersinia pestis b... gi\|167469553 - gi\|167469553\|ref\|ZP_02334257.1\| cell division topological specificity factor MinE [Yersinia pestis F... gi\|167056416, gi... - gi\|167424534\|ref\|ZP_02316287.1\| cell division topological specificity factor MinE [Yersinia pestis b... MINE_YERPB - Cell division topological specificity factor OS=Yersinia pseudotuberculosis serotype IB (strain PB1/... MINE_YERPY - Cell division topological specificity factor OS=Yersinia pseudotuberculosis serotype O:3 (strain YPI... gi\|165913211, gi... - gi\|165938848\|ref\|ZP_02227402.1\| cell division topological specificity factor MinE [Yersinia pestis b... gi\|149365995, gi... - gi\|149365995\|ref\|ZP_01888030.1\| cell division topological specificity factor [Yersinia pestis CA88-4... gi\|165919624, gi... - gi\|165928341\|ref\|ZP_02224173.1\| cell division topological specificity factor MinE [Yersinia pestis b... gi\|15980087, gi\|... - gi\|218929183\|ref\|YP_002347058.1\| cell division topological specificity factor MinE [Yersinia pestis ... MINE_YERPE - Cell division topological specificity factor OS=Yersinia pestis GN=minE PE=3 SV=1 MINE_YERE8 - Cell division topological specificity factor OS=Yersinia enterocolitica serotype O:8 / biotype 1B (s... MINE_YERPP - Cell division topological specificity factor OS=Yersinia pestis (strain Pestoides F) GN=minE PE=3 SV... gi\|21959079, gi\|... - gi\|22126120\|ref\|NP_669543.1\| cell division topological specificity factor MinE [Yersinia pestis KIM]... MINE_YERPS - Cell division topological specificity factor OS=Yersinia pseudotuberculosis serotype I (strain IP329... MINE_YERPS - Cell division topological specificity factor OS=Yersinia pseudotuberculosis GN=minE PE=3 SV=1 gi\|45441721, gi\|... - gi\|45441721\|ref\|NP_993260.1\| cell division topological specificity factor MinE [Yersinia pestis biov...	129.0	[0..1]	[87..1]
MINE_SHEDO - Cell division topological specificity factor OS=Shewanella denitrificans (strain OS217 / ATCC BAA-10...	129.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-88]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALLDFFLSR KKNTANIAKE RLQIIVAERR RSDAEPHYLP QLRKDILEVI CKYVQIDPEM  60
   61 VTVQLEQKDG DISILELNVT LPEAEELK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1ev0A
Description:	Cell division protein MinE topological specificity domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits