YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|194413610, gi...
Organism:	Escherichia coli B171
Length:	430 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|194413610, gi....

Description	E-value	Query Range	Subject Range
SYS_SHIDS - Serine--tRNA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=serS PE=3 SV=1	474.0	[0..1]	[430..1]
SYS_SHIB3 - Serine--tRNA ligase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=serS PE=3 SV=1	474.0	[0..1]	[430..1]
gi\|25293153 - pir\|\|H85614 hypothetical protein serS [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12514055, gi\|... - gi\|15800756\|ref\|NP_286770.1\| seryl-tRNA synthetase [Escherichia coli O157:H7 EDL933], gi\|12514055\|gb...	474.0	[0..1]	[430..1]
gi\|193070743, gi... - gi\|75234424\|ref\|ZP_00718785.1\| COG0172: Seryl-tRNA synthetase [Escherichia coli E110019], gi\|1930707...	473.0	[0..1]	[430..1]
SYS_PSEAE - Seryl-tRNA synthetase OS=Pseudomonas aeruginosa GN=serS PE=3 SV=1 SYS_PSEAE - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) ... gi\|254235598, gi... - gi\|84320581\|ref\|ZP_00968954.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa C3719], gi\|254... gi\|194552030, gi... - gi\|84326939\|ref\|ZP_00974963.1\| COG0172: Seryl-tRNA synthetase [Pseudomonas aeruginosa 2192], gi\|2542... SYS_PSEA8 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain LESB58) GN=serS PE=3 SV=1 SYS_PSEAB - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain UCBPP-PA14) GN=serS PE=3 SV=1 gi\|107102134 - gi\|107102134\|ref\|ZP_01366052.1\| hypothetical protein PaerPA_01003183 [Pseudomonas aeruginosa PACS2]	473.0	[0..1]	[430..1]
gi\|67155739\|ref\|... - Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP] gi\|67155739, gi\|... - gi\|67155739\|ref\|ZP_00417366.1\| Seryl-tRNA synthetase, class IIa [Azotobacter vinelandii AvOP], gi\|67...	472.0	[0..1]	[430..182]
gi\|167550365, gi... - gi\|205324587\|gb\|EDZ12426.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Saint... gi\|205327478, gi... - gi\|205327478\|gb\|EDZ14242.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|238913262 - gi\|238913262\|ref\|ZP_04657099.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... lcl\|NC_016856.1_... - [gene=serS] [protein=seryl-tRNA synthetase] [protein_id=YP_005236678.1] [location=1002151..1003443] SYS_SALPB - Serine--tRNA ligase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serS PE=3 SV=1 SYS_SALEP - Serine--tRNA ligase OS=Salmonella enteritidis PT4 (strain P125109) GN=serS PE=3 SV=1 SYS_SALTI - Serine--tRNA ligase OS=Salmonella typhi GN=serS PE=3 SV=1 gi\|213428591 - gi\|213428591\|ref\|ZP_03361341.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... SYS_SALCH - Serine--tRNA ligase OS=Salmonella choleraesuis GN=serS PE=3 SV=1 gi\|213580909 - gi\|213580909\|ref\|ZP_03362735.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|213609744 - gi\|213609744\|ref\|ZP_03369570.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|16759834 - gi\|16759834\|ref\|NP_455451.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typh... SYS_SALPK - Serine--tRNA ligase OS=Salmonella paratyphi A (strain AKU_12601) GN=serS PE=3 SV=1 SYS_SALDC - Serine--tRNA ligase OS=Salmonella dublin (strain CT_02021853) GN=serS PE=3 SV=1 SYS_SALTY - Serine--tRNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=serS PE=3 SV=... gi\|200390080, gi... - gi\|200390080\|ref\|ZP_03216691.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar V... gi\|29138023, gi\|... - gi\|29142393\|ref\|NP_805735.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Typh... SYS_SALG2 - Serine--tRNA ligase OS=Salmonella gallinarum (strain 287/91 / NCTC 13346) GN=serS PE=3 SV=1 SYS_SALCH - Serine--tRNA ligase OS=Salmonella choleraesuis (strain SC-B67) GN=serS PE=3 SV=1 SYS_SALNS - Serine--tRNA ligase OS=Salmonella newport (strain SL254) GN=serS PE=3 SV=1 SYS_SALPA - Serine--tRNA ligase OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN=serS PE=3 SV=1 gi\|194457722, gi... - gi\|194471358\|ref\|ZP_03077342.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar K... SYS_SALA4 - Serine--tRNA ligase OS=Salmonella agona (strain SL483) GN=serS PE=3 SV=1 SYS_SALTY - Serine--tRNA ligase OS=Salmonella typhimurium GN=serS PE=3 SV=1 gi\|197241068, gi... - gi\|197262813\|ref\|ZP_03162887.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar S... gi\|168230857, gi... - gi\|205334663\|gb\|EDZ21427.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Kentu... gi\|205347703, gi... - gi\|205347703\|gb\|EDZ34334.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Hadar... gi\|168466548, gi... - gi\|195631016\|gb\|EDX49602.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Newpo... gi\|205340753, gi... - gi\|205340753\|gb\|EDZ27517.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar Welte... gi\|213851472 - gi\|213851472\|ref\|ZP_03381370.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... gi\|214003461 - gi\|214003461\|ref\|ZP_03414196.1\| seryl-tRNA synthetase [Salmonella enterica subsp. enterica serovar T... SYS_SALTI - Seryl-tRNA synthetase OS=Salmonella typhi GN=serS PE=3 SV=1 SYS_SALTY - Seryl-tRNA synthetase OS=Salmonella typhimurium GN=serS PE=3 SV=1 SYS_SALPA - Serine--tRNA ligase OS=Salmonella paratyphi A GN=serS PE=3 SV=1 SYS_SALPB - Seryl-tRNA synthetase OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7) GN=serS PE=3 SV=1 SYS_SALCH - Seryl-tRNA synthetase OS=Salmonella choleraesuis GN=serS PE=3 SV=1	472.0	[0..1]	[430..1]
SYS_PSEA7 - Serine--tRNA ligase OS=Pseudomonas aeruginosa (strain PA7) GN=serS PE=3 SV=1	471.0	[0..1]	[430..1]
gi\|45441041, gi\|... - gi\|45441041\|ref\|NP_992580.1\| seryl-tRNA synthetase [Yersinia pestis biovar Microtus str. 91001], gi\|... gi\|22126673, gi\|... - gi\|22126673\|ref\|NP_670096.1\| seryl-tRNA synthetase [Yersinia pestis KIM], gi\|21959689\|gb\|AAM86347.1\|... gi\|16121659, gi\|... - gi\|218928527\|ref\|YP_002346402.1\| seryl-tRNA synthetase [Yersinia pestis CO92], gi\|16121659\|ref\|NP_40... SYS_YERPS - Serine--tRNA ligase OS=Yersinia pseudotuberculosis GN=serS PE=3 SV=1 SYS_YERPS - Serine--tRNA ligase OS=Yersinia pseudotuberculosis serotype I (strain IP32953) GN=serS PE=3 SV=1 SYS_YERPG - Serine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Angola) GN=serS PE=3 SV=1 SYS_YERP3 - Serine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=serS PE=3 SV=1 SYS_YERPE - Serine--tRNA ligase OS=Yersinia pestis GN=serS PE=3 SV=1 gi\|229841348, gi... - gi\|229841348\|ref\|ZP_04461507.1\| Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. PEXU2]... gi\|229843453, gi... - gi\|229843453\|ref\|ZP_04463599.1\| Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. India ... gi\|229895825, gi... - gi\|229895825\|ref\|ZP_04510995.1\| Seryl-tRNA synthetase [Yersinia pestis Pestoides A], gi\|229700748\|gb... SYS_YERPY - Serine--tRNA ligase OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=serS PE=3 SV=1 SYS_YERPB - Serine--tRNA ligase OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=serS PE=3 SV=1 gi\|89105522, gi\|... - gi\|89105522\|ref\|ZP_01178040.1\| COG0172: Seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str... SYS_YERPA - Serine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=serS PE=3 SV=1 SYS_YERPN - Serine--tRNA ligase OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=serS PE=3 SV=1 gi\|165924544, gi... - gi\|165924544\|ref\|ZP_02220376.1\| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. F19910... gi\|149366636, gi... - gi\|149366636\|ref\|ZP_01888670.1\| seryl-tRNA synthetase [Yersinia pestis CA88-4125], gi\|149291010\|gb\|E... gi\|166009792, gi... - gi\|166009792\|ref\|ZP_02230690.1\| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str. E1979001]... SYS_YERPP - Serine--tRNA ligase OS=Yersinia pestis (strain Pestoides F) GN=serS PE=3 SV=1 gi\|166211248, gi... - gi\|166211248\|ref\|ZP_02237283.1\| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str. B42003004... gi\|167400076, gi... - gi\|167400076\|ref\|ZP_02305594.1\| seryl-tRNA synthetase [Yersinia pestis biovar Antiqua str. UG05-0454... gi\|166962445, gi... - gi\|167419704\|ref\|ZP_02311457.1\| seryl-tRNA synthetase [Yersinia pestis biovar Orientalis str. MG05-1... gi\|167056885, gi... - gi\|167424036\|ref\|ZP_02315789.1\| seryl-tRNA synthetase [Yersinia pestis biovar Mediaevalis str. K1973...	466.0	[0..1]	[430..1]
SYS_METFK - Serine--tRNA ligase OS=Methylobacillus flagellatus (strain KT / ATCC 51484 / DSM 6875) GN=serS PE=3 ...	464.0	[0..1]	[429..1]

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Predicted Domain #1

Region A:
Residues: [1-430]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLDPNLLRNE PDAVAEKLAR RGFKLDVDKL GALEERRKVL QVKTENLQAE RNSRSKSIGQ  60
   61 AKARGEDIEP LRLEVNKLGE ELDAAKAELD ALQAEIRDIA LTIPNLPADE VPVGKDENDN 120
  121 VEVSRWGTPR EFDFEVRDHV TLGEMHSGLD FAAAVKLTGS RFVVMKGQIA RMHRALSQFM 180
  181 LDLHTEQHGY SENYVPYLVN QDTLYGTGQL PKFAGDLFHT RPLEEEADTS NYALIPTAEV 240
  241 PLTNLVRGEI IDEDDLPIKM TAHTPCFRSE AGSYGRDTRG LIRMHQFDKV EMVQIVRPED 300
  301 SMAALEEMTG HAEKVLQLLG LPYRKIILCT GDMGFGACKT YDLEVWIPAQ NTYREISSCS 360
  361 NVWDFQARRM QARCRSKSDK KTRLVHTLNG SGLAVGRTLV AVMENYQQAD GRIEVPEVLR 420
  421 PYMNGLEYIG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	120.0
Match:	2dq3A
Description:	No description for 2dq3A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits