YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|85674302, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	280 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|85674302, gi|....

Description	E-value	Query Range	Subject Range
gi\|119389184, gi... - gi\|119389185\|pdb\|2DFJ\|B Chain B, Crystal Structure Of The Diadenosine Tetraphosphate Hydrolase From ... APAH_SHIFL - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella flexneri GN=apaH PE=1 SV=1 gi\|30039858, gi\|... - gi\|30061616\|ref\|NP_835787.1\| diadenosine tetraphosphatase [Shigella flexneri 2a str. 2457T], gi\|3003... gi\|24111495, gi\|... - gi\|24111495\|ref\|NP_706005.1\| diadenosine tetraphosphatase [Shigella flexneri 2a str. 301], gi\|240502... APAH_SHIF8 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella flexneri serotype 5b (strain 8401) GN=ap... APAH_ECOSE - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain SE11) GN=apaH PE=3 SV=1 APAH_ECO8A - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O8 (strain IAI1) GN=apaH PE=3 SV... gi\|75255704, gi\|... - gi\|75255704\|ref\|ZP_00727470.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... gi\|194412099, gi... - gi\|75208905\|ref\|ZP_00709182.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_ECOHS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O9:H4 (strain HS) GN=apaH PE=3 S... APAH_ECO24 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O139:H28 (strain E24377A / ETEC)...	284.0	[0..1]	[280..1]
gi\|1003022 - gi\|1003022\|gb\|AAA79340.1\| ApaH gi\|1003022\|gb\|AA... - ApaH	283.0	[0..1]	[280..1]
gi\|40919 - gi\|40919\|emb\|CAA28416.1\| unnamed protein product [Escherichia coli]	282.0	[0..1]	[280..1]
gi\|195937725 - gi\|195937725\|ref\|ZP_03083107.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. EC4024] gi\|13359510, gi\|... - gi\|15829308\|ref\|NP_308081.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|189376016, gi... - gi\|189376016\|gb\|EDU94432.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|208814315, gi... - gi\|208814315\|ref\|ZP_03255644.1\| bis(5'-nucleosyl)-tetraphosphatase [Escherichia coli O157:H7 str. EC... gi\|208725417, gi... - gi\|208805616\|ref\|ZP_03247953.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O... APAH_ECO5E - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) G... gi\|208739236, gi... - gi\|208819113\|ref\|ZP_03259433.1\| bis(5'-nucleosyl)-tetraphosphatase [Escherichia coli O157:H7 str. EC... gi\|217320465, gi... - gi\|217324244\|ref\|ZP_03440328.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O... gi\|188014314, gi... - gi\|188014314\|gb\|EDU52436.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... APAH_ECO57 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O157:H7 GN=apaH PE=3 SV=1 gi\|168762815, gi... - gi\|189366966\|gb\|EDU85382.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168756879, gi... - gi\|189356059\|gb\|EDU74478.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168776971, gi... - gi\|187767712\|gb\|EDU31556.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168766743, gi... - gi\|189364224\|gb\|EDU82643.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|168785106, gi... - gi\|189374911\|gb\|EDU93327.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|189000772, gi... - gi\|189000772\|gb\|EDU69758.1\| bis(5'-nucleosyl)-tetraphosphatase (symmetrical) [Escherichia coli O157:... gi\|209746922, gi... - pir\|\|F90635 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) (EC 3.6.1.41) [similarity] - Escherichi... gi\|12512744, gi\|... - gi\|15799734\|ref\|NP_285746.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 EDL933], gi\|1251... gi\|254590588, gi... - gi\|254791188\|ref\|YP_003076025.1\| diadenosine tetraphosphatase [Escherichia coli O157:H7 str. TW14359... gi\|75227577, gi\|... - gi\|75227577\|ref\|ZP_00714332.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr...	281.0	[0..1]	[279..1]
APAH_SHIDS - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Shigella dysenteriae serotype 1 (strain Sd197) GN...	281.0	[0..1]	[279..1]
APAH_ECOL6 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 7009... APAH_ECO27 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)... APAH_ECOL6 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6 GN=apaH PE=3 SV=1 gi\|227885050, gi... - gi\|227885050\|ref\|ZP_04002855.1\| diadenosine tetraphosphatase [Escherichia coli 83972], gi\|227837879\|... sp\|B7UI97\|APAH_ECO27 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC)...	279.0	[0..1]	[279..1]
gi\|193070990, gi... - gi\|75234138\|ref\|ZP_00718542.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr...	279.0	[0..1]	[279..1]
gi\|191174116, gi... - gi\|75237156\|ref\|ZP_00721204.1\| COG0639: Diadenosine tetraphosphatase and related serine/threonine pr... APAH_ECO81 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O81 (strain ED1a) GN=apaH PE=3 S... APAH_ECOL5 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) G...	279.0	[0..1]	[279..1]
APAH_ECO45 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=a... APAH_ECOUT - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli (strain UTI89 / UPEC) GN=apaH PE... gi\|226902107, gi... - gi\|237704195\|ref\|ZP_04534676.1\| diadenosine tetraphosphatase [Escherichia sp. 3_2_53FAA], gi\|2269021... APAH_ECOK1 - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Escherichia coli O1:K1 / APEC GN=apaH PE=3 SV=1	278.0	[0..1]	[279..1]
APAH_SALPA - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42... APAH_SALPA - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella paratyphi A GN=apaH PE=3 SV=1 APAH_SALPK - Bis(5'-nucleosyl)-tetraphosphatase, symmetrical OS=Salmonella paratyphi A (strain AKU_12601) GN=apaH...	276.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-280]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATYLIGDVH GCYDELIALL HKVEFTPGKD TLWLTGDLVA RGPGSLDVLR YVKSLGDSVR  60
   61 LVLGNHDLHL LAVFAGISRN KPKDRLTPLL EAPDADELLN WLRRQPLLQI DEEKKLVMAH 120
  121 AGITPQWDLQ TAKECARDVE AVLSSDSYPF FLDAMYGDMP NNWSPELRGL GRLRFITNAF 180
  181 TRMRFCFPNG QLDMYSKESP EEAPAPLKPW FAIPGPVAEE YSIAFGHWAS LEGKGTPEGI 240
  241 YALDTGCCWG GTLTCLRWED KQYFVQPSNR HKDLGEAAAS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.69897
Match:	2dfjA
Description:	No description for 2dfjA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits