YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|81247546, gi\|...
Organism:	Shigella boydii Sb227
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|81247546, gi|....

Description	E-value	Query Range	Subject Range
gi\|110617077, gi... - gi\|110807529\|ref\|YP_691049.1\| thioredoxin [Shigella flexneri 5 str. 8401], gi\|110617077\|gb\|ABF05744.... gi\|68304124\|gb\|A... - TrxA [Escherichia coli] gi\|110644108, gi... - gi\|110644108\|ref\|YP_671838.1\| thioredoxin [Escherichia coli 536], gi\|110345700\|gb\|ABG71937.1\| thiore... gi\|68304124 - gi\|68304124\|gb\|AAY89720.1\| TrxA [Escherichia coli] tr\|A0A0G3HR77\|A0... - Thioredoxin 1 protein OS=Escherichia coli (strain K12) GN=trxA PE=4 SV=1 gi\|26250519, gi\|... - gi\|26250519\|ref\|NP_756559.1\| thioredoxin [Escherichia coli CFT073], gi\|26110949\|gb\|AAN83133.1\|AE0167... gi\|91213301, gi\|... - gi\|91213301\|ref\|YP_543287.1\| thioredoxin [Escherichia coli UTI89], gi\|91074875\|gb\|ABE09756.1\| thiore... gi\|24115074, gi\|... - ref\|NP_709584.1\| thioredoxin 1 [Shigella flexneri 2a str. 301], gb\|AAN45291.1\| thioredoxin 1 [Shige...	177.0	[0..1]	[127..18]
gi\|62130024, gi\|... - gi\|62182391\|ref\|YP_218808.1\| thioredoxin [Salmonella enterica subsp. enterica serovar Choleraesuis s...	167.0	[0..5]	[127..13]
gi\|76812139, gi\|... - gi\|76812139\|ref\|YP_333769.1\| thioredoxin 1 [Burkholderia pseudomallei 1710b], gi\|76581592\|gb\|ABA5106...	164.0	[0..11]	[126..31]
gi\|25067747 - gi\|25067747\|gb\|AAN65341.1\| thioredoxin/transketolase fusion protein [synthetic construct]	163.0	[0..19]	[127..1]
gi\|83721362, gi\|... - gi\|83721362\|ref\|YP_442739.1\| thioredoxin [Burkholderia thailandensis E264], gi\|83655187\|gb\|ABC39250....	162.0	[0..11]	[126..31]
gi\|575449 - gi\|575449\|gb\|AAA67270.1\| Derived from E. coli thioredoxin gene; normal translation termination codon...	162.0	[0..19]	[127..1]
gi\|33566268 - gi\|33566268\|emb\|CAE37179.1\| thioredoxin 1 [Bordetella parapertussis] gi\|33596499 - gi\|33596499\|ref\|NP_884142.1\| thioredoxin 1 [Bordetella parapertussis 12822] gi\|33592390, gi\|... - gi\|33592390\|ref\|NP_880034.1\| thioredoxin 1 [Bordetella pertussis Tohama I], gi\|33572035\|emb\|CAE41559...	162.0	[0..1]	[126..19]
gi\|33576644, gi\|... - gi\|33602206\|ref\|NP_889766.1\| thioredoxin 1 [Bordetella bronchiseptica RB50], gi\|33576644\|emb\|CAE3372...	162.0	[0..1]	[126..19]
gi\|25282752 - pir\|\|AD0471 thioredoxin 1 [imported] - Yersinia pestis (strain CO92) gi\|45437796, gi\|... - gi\|45442929\|ref\|NP_994468.1\| thioredoxin 1 [Yersinia pestis biovar Microtus str. 91001], gi\|45437796... gi\|21957044, gi\|... - gi\|22124275\|ref\|NP_667698.1\| thioredoxin 1 [Yersinia pestis KIM], gi\|21957044\|gb\|AAM83949.1\|AE013636... gi\|149289382, gi... - gi\|153997076\|ref\|ZP_02022209.1\| thioredoxin 1 [Yersinia pestis CA88-4125], gi\|149289382\|gb\|EDM39460.... gi\|15981783, gi\|... - gi\|218930871\|ref\|YP_002348746.1\| thioredoxin 1 [Yersinia pestis CO92], gi\|16124003\|ref\|NP_407316.1\| ... gi\|167055055, gi... - gi\|167425907\|ref\|ZP_02317660.1\| thioredoxin [Yersinia pestis biovar Mediaevalis str. K1973002], gi\|1... gi\|51587804, gi\|... - gi\|51594522\|ref\|YP_068713.1\| thioredoxin 1 [Yersinia pseudotuberculosis IP 32953], gi\|51587804\|emb\|C... gi\|167420843, gi... - gi\|167420843\|ref\|ZP_02312596.1\| thioredoxin [Yersinia pestis biovar Orientalis str. MG05-1020], gi\|1... gi\|186893520, gi... - gi\|186893520\|ref\|YP_001870632.1\| thioredoxin [Yersinia pseudotuberculosis PB1/+], gi\|186696546\|gb\|AC... gi\|169752779, gi... - gi\|170026245\|ref\|YP_001722750.1\| thioredoxin [Yersinia pseudotuberculosis YPIII], gi\|169752779\|gb\|AC... gi\|89103427, gi\|... - gi\|89103427\|ref\|ZP_01176005.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... Q66G18\|Q66G18_YERPS - Thioredoxin 1 - Yersinia pseudotuberculosis gi\|108806148, gi... - gi\|108806148\|ref\|YP_650064.1\| thioredoxin 1 [Yersinia pestis Antiqua], gi\|108778061\|gb\|ABG12119.1\| t... gi\|229682448, gi... - gi\|229900429\|ref\|ZP_04515558.1\| thioredoxin 1 [Yersinia pestis Nepal516], gi\|229682448\|gb\|EEO78535.1... gi\|229837201, gi... - gi\|229837201\|ref\|ZP_04457366.1\| thioredoxin 1 [Yersinia pestis Pestoides A], gi\|229706144\|gb\|EEO9215... gi\|229695927, gi... - gi\|229839561\|ref\|ZP_04459720.1\| thioredoxin 1 [Yersinia pestis biovar Orientalis str. PEXU2], gi\|229... gi\|229686904, gi... - gi\|229900124\|ref\|ZP_04515261.1\| thioredoxin 1 [Yersinia pestis biovar Orientalis str. India 195], gi... gi\|166009693, gi... - gi\|166009693\|ref\|ZP_02230591.1\| thioredoxin [Yersinia pestis biovar Antiqua str. E1979001], gi\|16599... gi\|165921813, gi... - gi\|165926289\|ref\|ZP_02222121.1\| thioredoxin [Yersinia pestis biovar Orientalis str. F1991016], gi\|16... gi\|167402076, gi... - gi\|167402076\|ref\|ZP_02307555.1\| thioredoxin [Yersinia pestis biovar Antiqua str. UG05-0454], gi\|1670... gi\|166205236, gi... - gi\|166213563\|ref\|ZP_02239598.1\| thioredoxin [Yersinia pestis biovar Antiqua str. B42003004], gi\|1662... gi\|162354023, gi... - gi\|77634499\|ref\|ZP_00796598.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pestis ... gi\|152961526, gi... - gi\|77630765\|ref\|ZP_00793351.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia pseudot...	160.0	[0..19]	[126..1]
gi\|238789357, gi... - gi\|77972622\|ref\|ZP_00828183.1\| COG0526: Thiol-disulfide isomerase and thioredoxins [Yersinia frederi...	159.0	[0..19]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLHQQRNQHA RLIPVELYMS DKIIHLTDDS FDTDVLKADG AILVDFWAEW CGPCKMIAPI  60
   61 LDEIADEYQG KLTVAKLNID QNPGTAPKYG IRGIPTLLLF KNGEVAATKV GALSKGQLKE 120
  121 FLDANLA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	39.0
Match:	2h71A
Description:	No description for 2h71A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits