YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|188490778, gi...
Organism:	Escherichia coli 53638
Length:	671 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|188490778, gi....

Description	E-value	Query Range	Subject Range
gi\|251785745, gi... - gi\|251785745\|ref\|YP_003000049.1\| hypothetical protein B21_02272 [Escherichia coli BL21], gi\|24237801... gi\|253974295, gi... - gi\|254162394\|ref\|YP_003045502.1\| NAD-dependent DNA ligase LigA [Escherichia coli B str. REL606], gi\|... gi\|253978462, gi... - gi\|254289155\|ref\|YP_003054903.1\| NAD-dependent DNA ligase LigA [Escherichia coli BL21(DE3)], gi\|2539... DNLJ_ECOHS - DNA ligase OS=Escherichia coli O9:H4 (strain HS) GN=ligA PE=3 SV=1	924.0	[0..1]	[671..1]
DNLJ_ECOL6 - DNA ligase OS=Escherichia coli O6 GN=ligA PE=3 SV=1 gi\|227887457, gi... - gi\|227887457\|ref\|ZP_04005262.1\| NAD-dependent DNA ligase LigA [Escherichia coli 83972], gi\|227835807... DNLJ_ECOL6 - DNA ligase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=ligA PE=3 SV=1 DNLJ_ECOSM - DNA ligase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=ligA PE=3 SV=1	923.0	[0..1]	[671..1]
gi\|146615 - gi\|146615\|gb\|AAA24071.1\| lig peptide	923.0	[0..1]	[671..1]
gi\|191174600, gi... - gi\|75235881\|ref\|ZP_00720026.1\| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Esc... DNLJ_ECOL5 - DNA ligase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ligA PE=3 SV=1	923.0	[0..1]	[671..1]
DNLJ_ECO55 - DNA ligase OS=Escherichia coli (strain 55989 / EAEC) GN=ligA PE=3 SV=1 DNLJ_ECOSE - DNA ligase OS=Escherichia coli (strain SE11) GN=ligA PE=3 SV=1 gi\|192925627, gi... - gi\|75255082\|ref\|ZP_00726982.1\| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Esc... DNLJ_ECO8A - DNA ligase OS=Escherichia coli O8 (strain IAI1) GN=ligA PE=3 SV=1 gi\|194411494, gi... - gi\|75208240\|ref\|ZP_00708603.1\| COG0272: NAD-dependent DNA ligase (contains BRCT domain type II) [Esc... DNLJ_ECO24 - DNA ligase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=ligA PE=3 SV=1	922.0	[0..1]	[671..1]
DNLJ_ECOK1 - DNA ligase OS=Escherichia coli O1:K1 / APEC GN=ligA PE=3 SV=1 gi\|226901300, gi... - gi\|237704934\|ref\|ZP_04535415.1\| NAD-dependent DNA ligase LigA [Escherichia sp. 3_2_53FAA], gi\|226901... DNLJ_ECOUT - DNA ligase OS=Escherichia coli (strain UTI89 / UPEC) GN=ligA PE=3 SV=1 DNLJ_ECO45 - DNA ligase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ligA PE=3 SV=1	922.0	[0..1]	[671..1]
DNLJ_SHISS - DNA ligase OS=Shigella sonnei (strain Ss046) GN=ligA PE=3 SV=1	921.0	[0..1]	[671..1]
gi\|254794365, gi... - gi\|254794365\|ref\|YP_003079202.1\| DNA ligase, NAD(+)-dependent [Escherichia coli O157:H7 str. TW14359... gi\|217319335, gi... - gi\|217326968\|ref\|ZP_03443051.1\| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. TW14588], g... DNLJ_ECO5E - DNA ligase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ligA PE=3 SV=1 gi\|15832537, gi\|... - gi\|15832537\|ref\|NP_311310.1\| NAD-dependent DNA ligase LigA [Escherichia coli O157:H7 str. Sakai], gi... DNLJ_ECO57 - DNA ligase OS=Escherichia coli O157:H7 GN=ligA PE=3 SV=3 gi\|189003243, gi... - gi\|189003243\|gb\|EDU72229.1\| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4076], gi\|168... gi\|168768500, gi... - gi\|189362250\|gb\|EDU80669.1\| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4486], gi\|168... gi\|208821178, gi... - gi\|208821178\|ref\|ZP_03261498.1\| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4042], gi... gi\|209764256, gi... - pir\|\|C91039 DNA ligase [imported] - Escherichia coli (strain O157:H7, substrain RIMD 0509952), gi\|20... gi\|208813694, gi... - gi\|208813694\|ref\|ZP_03255023.1\| DNA ligase, NAD-dependent [Escherichia coli O157:H7 str. EC4045], gi...	921.0	[0..1]	[671..1]
DNLJ_SHIDS - DNA ligase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=ligA PE=3 SV=1	920.0	[0..1]	[671..1]
DNLJ_SALTY - DNA ligase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=ligA PE=3 SV=1 DNLJ_SALTY - DNA ligase OS=Salmonella typhimurium GN=ligA PE=3 SV=1 lcl\|NC_016856.1_... - [gene=ligA] [protein=NAD-dependent DNA ligase LigA] [protein_id=YP_005238510.1] [location=complement... gi\|197262860, gi... - gi\|197262860\|ref\|ZP_03162934.1\| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serov... gi\|205329843, gi... - gi\|205329843\|gb\|EDZ16607.1\| DNA ligase, NAD-dependent [Salmonella enterica subsp. enterica serovar 4... DNLJ_SALTY - DNA ligase OS=Salmonella typhimurium GN=ligA PE=3 SV=1	919.0	[0..1]	[671..1]

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Predicted Domain #1

Region A:
Residues: [1-671]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESIEQQLTE LRTTLRHHEY LYHVMDAPEI PDAEYDRLMR ELRELETKHP ELITPDSPTQ  60
   61 RVGAAPLAAF SQIRHEVPML SLDNVFDEES FLAFNKRVQD RLKNNEKVTW CCELKLDGLA 120
  121 VSILYENGVL VSAATRGDGT TGEDITSNVR TIRAIPLKLH GENIPARLEV RGEVFLPQAG 180
  181 FEKINEDARR TGGKVFANPR NAAAGSLRQL DPRITAKRPL TFFCYGVGVL EGGELPDTHL 240
  241 GRLLQFKKWG LPVSDRVTLC ESAEEVLAFY HKVEEDRPTL GFDIDGVVIK VNSLAQQEQL 300
  301 GFVARAPRWA VAFKFPAQEQ MTFVRDVEFQ VGRTGAITPV ARLEPVHVAG VLVSNATLHN 360
  361 ADEIERLGLR IGDKVVIRRA GDVIPQVVNV VLSERPEDTR EVVFPTHCPV CGSDVERVEG 420
  421 EAVARCTGGL ICGAQRKESL KHFVSRRAMD VDGMGDKIID QLVEKEYVHT PADLFKLTAG 480
  481 KLTGLERMGP KSAQNVVNAL EKAKETTFAR FLYALGIREV GEATAAGLAA YFGTLEALEA 540
  541 ASIEELQKVP DVGIVVASHV HNFFAEESNR NVISELLAEG VHWPAPIVIN AEEIDSPFAG 600
  601 KTVVLTGSLS QMSRDDAKAR LVELGAKVAG SVSKKTDLVI AGEAAGSKLA KAQELGIEVI 660
  661 DEAEMLRLLG S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	1000.0
Match:	2owoA
Description:	No description for 2owoA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits