YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|74314546, gi\|...
Organism:	Shigella sonnei Ss046
Length:	471 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|74314546, gi|....

Description	E-value	Query Range	Subject Range
gi\|157163521, gi... - gi\|75197910\|ref\|ZP_00707980.1\| COG0305: Replicative DNA helicase [Escherichia coli HS], gi\|157163521...	501.0	[0..1]	[471..1]
gi\|189374952, gi... - gi\|189374952\|gb\|EDU93368.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC869], gi\|16878... gi\|15804644, gi\|... - gi\|15804644\|ref\|NP_290685.1\| replicative DNA helicase [Escherichia coli O157:H7 EDL933], gi\|12519003... gi\|168798288, gi... - gi\|189379073\|gb\|EDU97489.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC508], gi\|16879... gi\|15834288, gi\|... - gi\|15834288\|ref\|NP_313061.1\| replicative DNA helicase [Escherichia coli O157:H7 str. Sakai], gi\|1336... gi\|195935835 - gi\|195935835\|ref\|ZP_03081217.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4024] gi\|208728580, gi... - gi\|208808779\|ref\|ZP_03251116.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4206], gi\|... gi\|168760898, gi... - gi\|189368529\|gb\|EDU86945.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4501], gi\|1687... gi\|168766309, gi... - gi\|189364196\|gb\|EDU82615.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4486], gi\|1687... gi\|187769938, gi... - gi\|187769938\|gb\|EDU33782.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4196], gi\|1687... gi\|189001628, gi... - gi\|189001628\|gb\|EDU70614.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4076], gi\|1687... gi\|168748103, gi... - gi\|188017417\|gb\|EDU55539.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4113], gi\|1687... gi\|168755219, gi... - gi\|189357516\|gb\|EDU75935.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4401], gi\|1687... gi\|208734730, gi... - gi\|208813453\|ref\|ZP_03254782.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4045], gi\|... gi\|254595471, gi... - gi\|254796071\|ref\|YP_003080908.1\| replicative DNA helicase [Escherichia coli O157:H7 str. TW14359], g... gi\|208738898, gi... - gi\|208818775\|ref\|ZP_03259095.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4042], gi\|... DNAB_ECO57 - Replicative DNA helicase OS=Escherichia coli O157:H7 GN=dnaB PE=3 SV=1 gi\|209398031, gi... - gi\|209398031\|ref\|YP_002273592.1\| replicative DNA helicase [Escherichia coli O157:H7 str. EC4115], gi... gi\|209751276, gi... - pir\|\|F86098 replicative DNA helicase, part of primosome [imported] - Escherichia coli (strain O157:H... gi\|217325653, gi... - gi\|217325653\|ref\|ZP_03441737.1\| replicative DNA helicase [Escherichia coli O157:H7 str. TW14588], gi...	501.0	[0..1]	[471..1]
gi\|81243686, gi\|... - gi\|82779538\|ref\|YP_405887.1\| replicative DNA helicase [Shigella dysenteriae Sd197], gi\|81243686\|gb\|A...	500.0	[0..1]	[471..1]
gi\|26250838, gi\|... - gi\|26250838\|ref\|NP_756878.1\| replicative DNA helicase [Escherichia coli CFT073], gi\|26111269\|gb\|AAN8... gi\|91075152, gi\|... - gi\|91213578\|ref\|YP_543564.1\| replicative DNA helicase [Escherichia coli UTI89], gi\|91075152\|gb\|ABE10... gi\|237703612, gi... - gi\|237703612\|ref\|ZP_04534093.1\| replicative DNA helicase [Escherichia sp. 3_2_53FAA], gi\|226901524\|g...	499.0	[0..1]	[471..13]
gi\|218367894, gi... - gi\|218561125\|ref\|YP_002394038.1\| replicative DNA helicase [Escherichia coli S88], gi\|218367894\|emb\|C... DNAB_ECOL6 - Replicative DNA helicase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=dnaB PE=3... DNAB_ECOL6 - Replicative DNA helicase OS=Escherichia coli O6 GN=dnaB PE=3 SV=2 gi\|227886938, gi... - gi\|227886938\|ref\|ZP_04004743.1\| replicative DNA helicase [Escherichia coli 83972], gi\|227836079\|gb\|E... gi\|117626322, gi... - gi\|117626322\|ref\|YP_859645.1\| replicative DNA helicase [Escherichia coli APEC O1], gi\|115515446\|gb\|A...	498.0	[0..1]	[471..1]
gi\|161366739, gi... - gi\|161617375\|ref\|YP_001591340.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... DNAB_SALTI - Replicative DNA helicase OS=Salmonella typhi GN=dnaB PE=3 SV=1 DNAB_SALTI - Replicative DNA helicase OS=Salmonella typhi GN=dnaB PE=3 SV=1 DNAB_SALTY - Replicative DNA helicase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dnaB PE=... gi\|197251818, gi... - gi\|197251818\|ref\|YP_002149159.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... gi\|197263322, gi... - gi\|197263322\|ref\|ZP_03163396.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|197096450, gi... - gi\|197364973\|ref\|YP_002144610.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... gi\|198242008, gi... - gi\|198242008\|ref\|YP_002218140.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... gi\|194443549, gi... - gi\|194443549\|ref\|YP_002043496.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... gi\|194451626, gi... - gi\|194451626\|ref\|YP_002048236.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... DNAB_SALTY - Replicative DNA helicase OS=Salmonella typhimurium GN=dnaB PE=3 SV=1 gi\|194459243, gi... - gi\|194472879\|ref\|ZP_03078863.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|194734595, gi... - gi\|194734595\|ref\|YP_002117179.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... gi\|168243644, gi... - gi\|205337272\|gb\|EDZ24036.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar He... gi\|205348030, gi... - gi\|205348030\|gb\|EDZ34661.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar Ha... gi\|168466929, gi... - gi\|195630551\|gb\|EDX49163.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar Ne... gi\|168821309, gi... - gi\|205342134\|gb\|EDZ28898.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar We... gi\|205322846, gi... - gi\|205322846\|gb\|EDZ10685.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar Sa... gi\|167991436, gi... - gi\|205330098\|gb\|EDZ16862.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar 4,... gi\|205334289, gi... - gi\|205334289\|gb\|EDZ21053.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar Ke... gi\|197290002, gi... - gi\|197290002\|gb\|EDY29361.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar Sc... gi\|213973919 - gi\|213973919\|ref\|ZP_03401178.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... lcl\|NC_016856.1_... - [gene=dnaB] [protein=replicative DNA helicase] [protein_id=YP_005240539.1] [location=4480133..448154... gi\|214000142 - gi\|214000142\|ref\|ZP_03410877.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|224586011, gi... - gi\|224586011\|ref\|YP_002639810.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... gi\|213051930 - gi\|213051930\|ref\|ZP_03344808.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|213419245 - gi\|213419245\|ref\|ZP_03352311.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|213647519 - gi\|213647519\|ref\|ZP_03377572.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|213859875 - gi\|213859875\|ref\|ZP_03385579.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|199605671, gi... - gi\|200388573\|ref\|ZP_03215185.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|204926996, gi... - gi\|204926996\|ref\|ZP_03218198.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|205355018, gi... - gi\|205355018\|ref\|YP_002228819.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... gi\|206711203, gi... - gi\|207859400\|ref\|YP_002246051.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serov... gi\|238913005 - gi\|238913005\|ref\|ZP_04656842.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serova... gi\|29140052, gi\|... - gi\|29144414\|ref\|NP_807756.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar T... gi\|16762927 - gi\|16762927\|ref\|NP_458544.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar T... DNAB_SALTY - Replicative DNA helicase OS=Salmonella typhimurium GN=dnaB PE=3 SV=1 gi\|56130303, gi\|... - gi\|56416046\|ref\|YP_153121.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar P...	492.0	[0..1]	[471..1]
gi\|62130328, gi\|... - gi\|62182695\|ref\|YP_219112.1\| replicative DNA helicase [Salmonella enterica subsp. enterica serovar C...	490.0	[0..1]	[471..1]
gi\|25299883 - pir\|\|AB0040 replicative DNA helicase (EC 3.6.1.-) [imported] - Yersinia pestis (strain CO92) gi\|89104138, gi\|... - gi\|89104138\|ref\|ZP_01176690.1\| COG0305: Replicative DNA helicase [Yersinia pestis biovar Orientalis ... gi\|108809955, gi... - gi\|108809955\|ref\|YP_653871.1\| replicative DNA helicase [Yersinia pestis Antiqua], gi\|108781868\|gb\|AB... Q66FG2\|Q66FG2_YERPS - Replicative DNA helicase - Yersinia pseudotuberculosis gi\|45435185, gi\|... - gi\|45440329\|ref\|NP_991868.1\| replicative DNA helicase [Yersinia pestis biovar Microtus str. 91001], ... gi\|22124491, gi\|... - gi\|22124491\|ref\|NP_667914.1\| replicative DNA helicase [Yersinia pestis KIM], gi\|21957283\|gb\|AAM84165... gi\|15978420, gi\|... - gi\|218927525\|ref\|YP_002345400.1\| replicative DNA helicase [Yersinia pestis CO92], gi\|16120657\|ref\|NP... gi\|51594729, gi\|... - gi\|51594729\|ref\|YP_068920.1\| replicative DNA helicase [Yersinia pseudotuberculosis IP 32953], gi\|515... gi\|165921307, gi... - gi\|165926684\|ref\|ZP_02222516.1\| replicative DNA helicase [Yersinia pestis biovar Orientalis str. F19... gi\|166213911, gi... - gi\|166213911\|ref\|ZP_02239946.1\| replicative DNA helicase [Yersinia pestis biovar Antiqua str. B42003... gi\|165990514, gi... - gi\|166010424\|ref\|ZP_02231322.1\| replicative DNA helicase [Yersinia pestis biovar Antiqua str. E19790... gi\|229679765, gi... - gi\|229903995\|ref\|ZP_04519108.1\| replicative DNA helicase [Yersinia pestis Nepal516], gi\|229679765\|gb... gi\|166963161, gi... - gi\|167419167\|ref\|ZP_02310920.1\| replicative DNA helicase [Yersinia pestis biovar Orientalis str. MG0... gi\|167402462, gi... - gi\|167402462\|ref\|ZP_02307919.1\| replicative DNA helicase [Yersinia pestis biovar Antiqua str. UG05-0... gi\|167054844, gi... - gi\|167426133\|ref\|ZP_02317886.1\| replicative DNA helicase [Yersinia pestis biovar Mediaevalis str. K1... gi\|229706261, gi... - gi\|229836577\|ref\|ZP_04456743.1\| replicative DNA helicase [Yersinia pestis Pestoides A], gi\|229706261... gi\|229840185, gi... - gi\|229840185\|ref\|ZP_04460344.1\| replicative DNA helicase [Yersinia pestis biovar Orientalis str. PEX... gi\|229690577, gi... - gi\|229842267\|ref\|ZP_04462422.1\| replicative DNA helicase [Yersinia pestis biovar Orientalis str. Ind... gi\|150260634, gi... - gi\|150260634\|ref\|ZP_01917362.1\| replicative DNA helicase [Yersinia pestis CA88-4125], gi\|149290042\|g... gi\|145212595, gi... - gi\|145600899\|ref\|YP_001164975.1\| replicative DNA helicase [Yersinia pestis Pestoides F], gi\|14521259... gi\|162354692, gi... - gi\|77634671\|ref\|ZP_00796767.1\| COG0305: Replicative DNA helicase [Yersinia pestis Angola], gi\|162421... gi\|117675189, gi... - gi\|77631320\|ref\|ZP_00793906.1\| COG0305: Replicative DNA helicase [Yersinia pseudotuberculosis IP 317...	484.0	[0..1]	[471..1]
gi\|77978791, gi\|... - gi\|77978791\|ref\|ZP_00834216.1\| COG0305: Replicative DNA helicase [Yersinia intermedia ATCC 29909], g... gi\|238716126, gi... - gi\|77957494\|ref\|ZP_00821548.1\| COG0305: Replicative DNA helicase [Yersinia bercovieri ATCC 43970], g...	482.0	[0..1]	[471..1]
gi\|238717656, gi... - gi\|77961093\|ref\|ZP_00824940.1\| COG0305: Replicative DNA helicase [Yersinia mollaretii ATCC 43969], g...	481.0	[0..1]	[471..1]

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Predicted Domain #1

Region A:
Residues: [1-471]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGNKPFNKQ QAEPRERDPQ VAGLKVPPHS IEAEQSVLGG LMLDNERWDD VAERVVADDF  60
   61 YTRPHRHIFT EMARLQESGS PIDLITLAES LERQGQLDSV GGFAYLAELS KNTPSAANIS 120
  121 AYADIVRERA VVREMISVAN EIAEAGFDPQ GRTSEDLLDL AESRVFKIAE SRANKDEGPK 180
  181 NIADVLDATV ARIEQLFQQP HDGVTGVNTG YDDLNKKTAG LQPSDLIIVA ARPSMGKTTF 240
  241 AMNLVENAAM LQDKPVLIFS LEMPSEQIMM RSLASLSRVD QTKIRTGQLD DEDWARISGT 300
  301 MGILLEKRNI YIDDSSGLTP TEVRSRARRI AREHGGIGLI MIDYLQLMRV PALSDNRTLE 360
  361 IAEISRSLKA LAKELNVPVV ALSQLNRSLE QRADKRPVNS DLRESGSIEQ DADLIMFIYR 420
  421 DEVYHENSDL KGIAEIIIGK QRNGPIGTVR LTFNGQWSRF DNYAGPQYDD E

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	111.0
Match:	2q6tA
Description:	No description for 2q6tA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits