YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|81254994, gi\|...
Organism:	Mycobacterium tuberculosis C
Length:	288 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|81254994, gi|....

Description	E-value	Query Range	Subject Range
gi\|23492890, gi\|... - gi\|25027608\|ref\|NP_737662.1\| hypothetical protein CE1052 [Corynebacterium efficiens YS-314], gi\|2349...	306.0	[0..1]	[288..1]
gi\|21323755, gi\|... - gi\|23308816\|ref\|NP_600215.2\| hypothetical protein NCgl0948 [Corynebacterium glutamicum ATCC 13032], ...	305.0	[0..1]	[288..1]
gi\|111022815, gi... - gi\|111022815\|ref\|YP_705787.1\| N-acetylglucosaminylphosphatidylinositol deacetylase [Rhodococcus jost...	299.0	[0..1]	[287..1]
gi\|108771525, gi... - gi\|108801106\|ref\|YP_641303.1\| LmbE-like protein [Mycobacterium sp. MCS], gi\|108771525\|gb\|ABG10247.1\|... gi\|92438088, gi\|... - gi\|92917690\|ref\|ZP_01286300.1\| LmbE-like protein [Mycobacterium sp. KMS], gi\|92438088\|gb\|EAS95945.1\|... gi\|92430790, gi\|... - gi\|92911786\|ref\|ZP_01280424.1\| LmbE-like protein [Mycobacterium sp. JLS], gi\|92430790\|gb\|EAS90130.1\|...	298.0	[0..1]	[287..1]
gi\|38199783 - gi\|38199783\|emb\|CAE49446.1\| Conserved hypothetical protein [Corynebacterium diphtheriae] gi\|38233523 - gi\|38233523\|ref\|NP_939290.1\| hypothetical protein DIP0927 [Corynebacterium diphtheriae NCTC 13129]	293.0	[0..5]	[287..9]
gi\|29606950, gi\|... - gi\|29829841\|ref\|NP_824475.1\| hypothetical protein SAV_3299 [Streptomyces avermitilis MA-4680], gi\|29...	291.0	[0..3]	[286..4]
gi\|145215124, gi... - gi\|89341321\|ref\|ZP_01193565.1\| LmbE-like protein [Mycobacterium flavescens PYR-GCK], gi\|89318481\|gb\|...	291.0	[0..1]	[287..1]
gi\|221230761, gi... - gi\|221230761\|ref\|YP_002504177.1\| hypothetical protein MLBr_02391 [Mycobacterium leprae Br4923], gi\|2... gi\|15828284 - gi\|15828284\|ref\|NP_302547.1\| hypothetical protein ML2391 [Mycobacterium leprae TN] gi\|25351046, gi\|... - gi\|699274\|gb\|AAA63037.1\| lmbE [Mycobacterium leprae], pir\|\|C87208 conserved hypothetical protein ML2...	289.0	[0..1]	[287..1]
MCA_STRCO - Mycothiol S-conjugate amidase OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=mca...	287.0	[0..3]	[286..4]

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Predicted Domain #1

Region A:
Residues: [1-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSELRLMAVH AHPDDESSKG AATLARYADE GHRVLVVTLT GGERGEILNP AMDLPDVHGR  60
   61 IAEIRRDEMT KAAEILGVEH TWLGFVDSGL PKGDLPPPLP DDCFARVPLE VSTEALVRVV 120
  121 REFRPHVMTT YDENGGYPHP DHIRCHQVSV AAYEAAGDFC RFPDAGEPWT VSKLYYVHGF 180
  181 LRERMQMLQD EFARHGQRGP FEQWLAYWDP DHDFLTSRVT TRVECSKYFS QRDDALRAHA 240
  241 TQIDPNAEFF AAPLAWQERL WPTEEFELAR SRIPARPPET ELFAGIEP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	44.69897
Match:	1q7tA
Description:	Rv1170 (MshB) from Mycobacterium tuberculosis
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits