YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60823945
Organism:	synthetic construct
Length:	163 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60823945.

Description	E-value	Query Range	Subject Range
RARR2_CRIGR - Retinoic acid receptor responder protein 2 OS=Cricetulus griseus GN=RARRES2 PE=2 SV=1	3.0E-86	[1..160]	[1..160]
gi\|109069378 - gi\|109069378\|ref\|XP_001088949.1\| PREDICTED: similar to retinoic acid receptor responder (tazarotene ...	2.0E-85	[1..163]	[1..163]
gi\|60834310 - gi\|60834310\|gb\|AAX37088.1\| retinoic acid receptor responder 2 [synthetic construct]	7.0E-85	[1..163]	[1..163]
TIG2_PONPY, RARR... - (Q5R551) Retinoic acid receptor responder protein 2 precursor, Retinoic acid receptor responder prot... RARR2_PONAB - Retinoic acid receptor responder protein 2 OS=Pongo abelii GN=RARRES2 PE=2 SV=1	9.0E-85	[1..163]	[1..163]
gi\|114616696 - gi\|114616696\|ref\|XP_001134678.1\| PREDICTED: retinoic acid receptor responder (tazarotene induced) 2 ...	9.0E-85	[1..163]	[1..163]
gi\|61740621, gi\|... - gi\|61740621\|ref\|NP_001013445.1\| chemerin [Rattus norvegicus], gi\|60551830\|gb\|AAH91177.1\| Retinoic ac...	1.0E-84	[1..160]	[1..160]
gi\|24416494 - gi\|24416494\|gb\|AAH38914.1\| Retinoic acid receptor responder (tazarotene induced) 2 [Mus musculus]	1.0E-82	[1..160]	[1..159]
gi\|73978650, gi\|... - gi\|73978650\|ref\|XP_860208.1\| PREDICTED: similar to retinoic acid receptor responder (tazarotene indu...	2.0E-76	[1..163]	[1..163]
RARR2_BOVIN - Retinoic acid receptor responder protein 2 OS=Bos taurus GN=RARRES2 PE=2 SV=1	6.0E-66	[14..160]	[14..160]

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Predicted Domain #1

Region A:
Residues: [1-163]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRRLLIPLAL WLGAVGVGVA ELTEAQRRGL QVALEEFHKH PPVQWAFQET SVESAVDTPF  60
   61 PAGIFVRLEF KLQQTSCRKR DWKKPECKVR PNGRKRKCLA CIKLGSEDKV LGRLVHCPIE 120
  121 TQVLREAEEH QETQCLRVQR AGEDPHSFYF PGQFAFSKAL PRS

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.42
Match:	1rn7A
Description:	Structure of human cystatin D
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.206528888221529	bayes_pls_golite062009
protein binding	0.0935287761320007	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: