YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|111305145, gi...
Organism:	Bos taurus
Length:	216 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|111305145, gi....

Description	E-value	Query Range	Subject Range
gi\|73975379 - gi\|73975379\|ref\|XP_539306.2\| PREDICTED: similar to Mps one binder kinase activator-like 1A (Mob1 hom...	0.0	[1..216]	[183..398]
gi\|10435207 - gi\|10435207\|dbj\|BAB14525.1\| unnamed protein product [Homo sapiens]	3.0E-99	[1..216]	[1..216]
gi\|115313732, gi... - gi\|89269096\|emb\|CAJ81503.1\| MOB1, Mps One Binder kinase activator-like 1B [Xenopus tropicalis], gi\|6...	9.0E-99	[1..216]	[1..216]
gi\|109484173, gi... - gi\|34856301\|ref\|XP_342714.1\| PREDICTED: similar to Mob4B protein [Rattus norvegicus], gi\|27730897\|re...	2.0E-98	[1..216]	[1..216]
gi\|50746669 - gi\|50746669\|ref\|XP_420601.1\| PREDICTED: similar to MOB1, Mps One Binder kinase activator-like 1A (ye...	2.0E-98	[1..216]	[1..216]
gi\|26324368 - gi\|26324368\|dbj\|BAC25938.1\| unnamed protein product [Mus musculus]	3.0E-98	[1..216]	[1..216]
gi\|148726039, gi... - gi\|46362543\|gb\|AAH66567.1\| Mobkl1b protein [Danio rerio], gi\|148726039\|emb\|CAN87846.1\| MOB1, Mps One...	5.0E-98	[1..216]	[1..216]
gi\|109103421 - gi\|109103421\|ref\|XP_001107567.1\| PREDICTED: similar to Mob4B protein [Macaca mulatta]	6.0E-98	[6..216]	[48..258]

Back

Predicted Domain #1

Region A:
Residues: [1-216]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFLFSSRSS KTFKPKKNIP EGSHQYELLK HAEATLGSGN LRQAVMLPEG EDLNEWIAVN  60
   61 TVDFFNQINM LYGTITEFCT EASCPVMSAG PRYEYHWADG TNIKKPIKCS APKYIDYLMT 120
  121 WVQDQLDDET LFPSKIGVPF PKNFMSVAKT ILKRLFRVYA HIYHQHFDSV MQLQEEAHLN 180
  181 TSFKHFIFFV QEFNLIDRRE LAPLQELIEK LGSKDR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	87.30103
Match:	1r3bA
Description:	Solution structure of xenopus laevis Mob1
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.92301852481284	bayes_pls_golite062009
kinase regulator activity	1.89112613830997	bayes_pls_golite062009
enzyme regulator activity	1.85961781963242	bayes_pls_golite062009
protein binding	1.70532605681329	bayes_pls_golite062009
protein kinase regulator activity	1.22656624834768	bayes_pls_golite062009
enzyme activator activity	1.01199608762933	bayes_pls_golite062009
kinase activator activity	0.48120280834988	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: