YRC Public Data Repository - Protein Structure Prediction

Protein:	RL32_CANLF
Organism:	Canis lupus familiaris
Length:	135 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL32_CANLF.

Description	E-value	Query Range	Subject Range
gi\|74004278 - gi\|74004278\|ref\|XP_535916.2\| PREDICTED: similar to 60S ribosomal protein L32 [Canis familiaris]	5.0E-67	[1..135]	[129..263]
gi\|114585496 - gi\|114585496\|ref\|XP_001156249.1\| PREDICTED: hypothetical protein isoform 1 [Pan troglodytes]	7.0E-59	[1..135]	[1..135]
gi\|60811211 - gi\|60811211\|gb\|AAX36164.1\| ribosomal protein L32 [synthetic construct]	3.0E-58	[1..135]	[1..135]
gi\|109079692 - gi\|109079692\|ref\|XP_001091424.1\| PREDICTED: similar to 60S ribosomal protein L32 [Macaca mulatta]	8.0E-58	[1..135]	[1..135]
IPI:IPI00985635.... - Tax_Id=10090 Gene_Symbol=LOC100504872 60S ribosomal protein L32-like RL32_BOVIN - 60S ribosomal protein L32 OS=Bos taurus GN=RPL32 PE=2 SV=3 gi\|149728432 - gi\|149728432\|ref\|XP_001492092.1\| PREDICTED: similar to ribosomal protein L32 [Equus caballus]	1.0E-57	[1..135]	[1..135]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAALRPLVKP KIVKKRTKKF IRHQSDRYVK IKRNWRKPRG IDNRVRRRFK GQILMPNIGY  60
   61 GSNKKTKHML PSGFRKFLVH NVKELEVLLM CNKSYCAEIA HNVSSKNRKA IVERAAQLAI 120
  121 RVTNPNARLR SEENE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.522879
Match:	1s1i0
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits