YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60655671, gi\|...
Organism:	synthetic construct
Length:	456 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60655671, gi|....

Description	E-value	Query Range	Subject Range
gi\|60652563, gi\|... - gi\|60652563\|gb\|AAX28976.1\| RuvB-like 1 [synthetic construct], gi\|30584409\|gb\|AAP36457.1\| Homo sapien...	3.0E-66	[1..456]	[1..456]
gi\|62896709 - gi\|62896709\|dbj\|BAD96295.1\| TATA binding protein interacting protein 49 kDa variant [Homo sapiens]	3.0E-66	[1..456]	[1..456]
RUVB1_MOUSE - RuvB-like 1 OS=Mus musculus GN=Ruvbl1 PE=1 SV=1 tr\|G3HIC5\|G3HIC5... - DNA helicase OS=Cricetulus griseus GN=I79_010385 PE=4 SV=1 RUVB1_RAT - RuvB-like 1 OS=Rattus norvegicus GN=Ruvbl1 PE=1 SV=1	4.0E-66	[1..456]	[1..456]
RUVB1_XENLA - RuvB-like 1 OS=Xenopus laevis GN=ruvbl1 PE=2 SV=1	4.0E-65	[1..456]	[1..456]
gi\|47209076 - gi\|47209076\|emb\|CAF90503.1\| unnamed protein product [Tetraodon nigroviridis]	4.0E-65	[1..456]	[1..469]
gi\|57524964, gi\|... - gi\|57524964\|ref\|NP_001006138.1\| RuvB-like 1 [Gallus gallus], gi\|53136380\|emb\|CAG32519.1\| hypothetica...	1.0E-64	[1..456]	[1..456]

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Predicted Domain #1

Region A:
Residues: [1-456]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKIEEVKSTT KTQRIASHSH VKGLGLDESG LAKQAASGLV GQENAREACG VIVELIKSKK  60
   61 MAGRAVLLAG PPGTGKTALA LAIAQELGSK VPFCPMVGSE VYSTEIKKTE VLMENFRRAI 120
  121 GLRIKETKEV YEGEVTELTP CETENPMGGY GKTISHVIIG LKTAKGTKQL KLDPSIFESL 180
  181 QKERVEAGDV IYIEANSGAV KRQGRCDTYA TEFDLEAEEY VPLPKGDVHK KKEIIQDVTL 240
  241 HDLDVANARP QGGQDILSMM GQLMKPKKTE ITDKLRGEIN KVVNKYIDQG IAELVPGVLF 300
  301 VDEVHMLDIE CFTYLHRALE SSIAPIVIFA SNRGNCVIRG TEDITSPHGI PLDLLDRVMI 360
  361 IRTMLYTPQE MKQIIKIRAQ TEGINISEEA LNHLGEIGTK TTLRYSVQLL TPANLLAKIN 420
  421 GKDSIEKEHV EEISELFYDA KSSAKILADQ QDKYMK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	67.69897
Match:	2c9oA
Description:	No description for 2c9oA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits