YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75228668, gi\|...
Organism:	Escherichia coli B7A
Length:	551 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75228668, gi|....

Description	E-value	Query Range	Subject Range
gi\|82948068, gi\|... - gi\|83313227\|ref\|YP_423491.1\| L-lactate permease [Magnetospirillum magneticum AMB-1], gi\|82948068\|dbj...	482.0	[0..1]	[551..205]
gi\|194459241, gi... - gi\|194472877\|ref\|ZP_03078861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kent... gi\|197291254, gi... - gi\|197291254\|gb\|EDY30606.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Schwarze... gi\|62182186, gi\|... - gi\|62182186\|ref\|YP_218603.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Cholera... gi\|205333228, gi... - gi\|205333228\|gb\|EDZ19992.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Kentucky... gi\|224585493, gi... - gi\|224585493\|ref\|YP_002639292.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Par... gi\|204321998, gi... - gi\|204928565\|ref\|ZP_03219764.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Javi... gi\|194737852, gi... - gi\|194737852\|ref\|YP_002116629.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sch...	473.0	[0..1]	[551..1]
gi\|214001126 - gi\|214001126\|ref\|ZP_03411861.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... LLDP_SALTI - L-lactate permease OS=Salmonella typhi GN=lldP PE=3 SV=1 LLDP_SALTI - L-lactate permease OS=Salmonella typhi GN=lldP PE=3 SV=1 gi\|213647892 - gi\|213647892\|ref\|ZP_03377945.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... gi\|213427162 - gi\|213427162\|ref\|ZP_03359912.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typh... gi\|29139743, gi\|... - gi\|29144106\|ref\|NP_807448.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typhi s... gi\|16762617 - gi\|16762617\|ref\|NP_458234.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Typhi s...	472.0	[0..1]	[551..1]
gi\|198242134, gi... - gi\|198242134\|ref\|YP_002217654.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Dub... lcl\|NC_016856.1_... - [gene=lldP] [protein=L-lactate permease] [protein_id=YP_005239931.1] [location=3899604..3901259] gi\|197264645, gi... - gi\|197264645\|ref\|ZP_03164719.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Sain... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1 gi\|195632495, gi... - gi\|195632495\|gb\|EDX50979.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Newport ... gi\|205327790, gi... - gi\|205327790\|gb\|EDZ14554.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar 4,[5],12... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=lldP PE=3 SV=1 gi\|206710732, gi... - gi\|207858929\|ref\|YP_002245580.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Ent... LLDP_SALTY - L-lactate permease OS=Salmonella typhimurium GN=lldP PE=3 SV=1	471.0	[0..1]	[551..1]
gi\|56129839, gi\|... - gi\|56415582\|ref\|YP_152657.1\| L-lactate permease [Salmonella enterica subsp. enterica serovar Paratyp...	471.0	[0..1]	[551..1]
gi\|82737639, gi\|... - gi\|82737639\|ref\|ZP_00900486.1\| L-lactate permease [Pseudomonas putida F1], gi\|82715292\|gb\|EAP50359.1... gi\|24986489, gi\|... - gi\|26991418\|ref\|NP_746843.1\| L-lactate transport [Pseudomonas putida KT2440], gi\|24986489\|gb\|AAN7030...	456.0	[0..1]	[550..1]
gi\|95108990 - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48] gi\|104780003, gi... - gi\|95108990\|emb\|CAK13686.1\| L-lactate permease [Pseudomonas entomophila L48], gi\|104780003\|ref\|YP_60...	454.0	[0..1]	[550..1]
gi\|26110676, gi\|... - gi\|26250247\|ref\|NP_756287.1\| L-lactate permease [Escherichia coli CFT073], gi\|26110676\|gb\|AAN82861.1... gi\|237703374, gi... - gi\|237703374\|ref\|ZP_04533855.1\| L-lactate permease [Escherichia sp. 3_2_53FAA], gi\|226902638\|gb\|EEH8... gi\|91074691, gi\|... - gi\|91213117\|ref\|YP_543103.1\| L-lactate permease [Escherichia coli UTI89], gi\|91074691\|gb\|ABE09572.1\|...	454.0	[0..1]	[551..8]
gi\|152977432, gi... - gi\|89201151\|ref\|ZP_01179897.1\| L-lactate permease [Bacillus cereus subsp. cytotoxis NVH 391-98], gi\|...	452.0	[0..1]	[551..1]
gi\|33469574 - gi\|33469574\|gb\|AAQ19815.1\| lactate permease [Alcaligenes faecalis]	449.0	[0..2]	[551..3]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLWQQNYDP AGNIWLSSLI ASLPILFFFF ALIKLKLKGY VAASWTVAIA LAVALLFYKM  60
   61 PVANALASVV YGFFYGLWPI AWIIIAAVFV YKISVKTGQF DIIRSSILSI TPDQRLQMLI 120
  121 VGFCFGAFLE GAAGF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-361]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GAPVAITAAL LVGLGFKPLY AAGLCLIVNT APVAFGAMGI PILVAGQVTG IDSFEIGQMV  60
   61 GRQLPFMTII VLFWIMAIMD GWRGIKETWP AVVVAGGSFA IAQYLSSNFI GPELPDIISS 120
  121 LVSLLCLTLF LKRWQPVRVF RFGDLGASQV DMTLAHTGYT AGQVLRAWTP FLFLTATVTL 180
  181 WSIPPFKALF ASGGALYEWV INIPVPYLDK LVARMPPVVS EATAYA

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [362-551]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AVFKFDWFSA TGTAILFAAL LSIVWLKMKP SDAISTFGST LKELALPIYS IGMVLAFAFI  60
   61 SNYSGLSSTL ALALAHTGHA FTFFSPFLGW LGVFLTGSDT SSNALFAALQ ATAAQQIGVS 120
  121 DLLLVAANTT GGVTGKMISP QSIAIACAAV GLVGKESDLF RFTVKHSLIF TCIVGVITTL 180
  181 QAYVLTWMIP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits