YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|123992113, gi...
Organism:	synthetic construct
Length:	110 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|123992113, gi....

Description	E-value	Query Range	Subject Range
INS1_RAT - Insulin-1 OS=Rattus norvegicus GN=Ins1 PE=1 SV=1	8.0E-33	[1..110]	[1..110]
INS_PONPY - Insulin OS=Pongo pygmaeus GN=INS PE=3 SV=1	2.0E-32	[1..110]	[1..110]
INS_CRILO - Insulin OS=Cricetulus longicaudatus GN=INS PE=1 SV=2 gi\|305360, gi\|21... - gi\|305360\|gb\|AAA37089.1\| preproinsulin, gi\|2137094\|pir\|\|I48166 insulin precursor - golden hamster	3.0E-32	[1..110]	[1..110]
INS_MACFA - Insulin OS=Macaca fascicularis GN=INS PE=3 SV=1	4.0E-32	[1..110]	[1..110]
gi\|30584395, gi\|... - gi\|60653575\|gb\|AAX29481.1\| insulin [synthetic construct], gi\|60653573\|gb\|AAX29480.1\| insulin [synthe...	4.0E-32	[1..110]	[1..110]
INS_PANTR - Insulin OS=Pan troglodytes GN=INS PE=1 SV=1	6.0E-32	[1..110]	[1..110]
INS_CHLAE - Insulin OS=Chlorocebus aethiops GN=INS PE=1 SV=1	1.0E-31	[1..110]	[1..110]
INS_CHICK - Insulin OS=Gallus gallus GN=INS PE=1 SV=1	4.0E-31	[1..110]	[1..107]
gi\|86989480 - gi\|86989480\|emb\|CAJ76270.1\| insulin II [Mus spretus] INS2_MOUSE - Insulin-2 OS=Mus musculus GN=Ins2 PE=1 SV=1	5.0E-31	[1..110]	[1..110]

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Predicted Domain #1

Region A:
Residues: [1-110]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALWMRLLPL LALLALWGPD PAAAFVNQHL CGSHLVEALY LVCGERGFFY TPKTRREAED  60
   61 LQVGQVELGG GPGAGSLQPL ALEGSLQKRG IVEQCCTSIC SLYQLENYCN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	17.69897
Match:	1efeA
Description:	Insulin
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.278956919805523	bayes_pls_golite062009
protein binding	0.06220495723124	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: