YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|60655957, gi\|...
Organism:	synthetic construct
Length:	162 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|60655957, gi|....

Description	E-value	Query Range	Subject Range
gi\|89268303 - gi\|89268303\|emb\|CAJ82851.1\| basic transcription factor 3 [Xenopus tropicalis]	310.0	[0..1]	[161..48]
BTF3_MOUSE - Transcription factor BTF3 OS=Mus musculus GN=Btf3 PE=1 SV=3	304.0	[0..1]	[162..43]
gi\|109077564 - gi\|109077564\|ref\|XP_001100404.1\| PREDICTED: basic transcription factor 3 isoform 2 [Macaca mulatta]	301.0	[0..1]	[162..45]
gi\|208965864 - gi\|208965864\|dbj\|BAG72946.1\| basic transcription factor 3 [synthetic construct] BTF3 - basic transcription factor 3 gi\|55624114 - gi\|55624114\|ref\|XP_517710.1\| PREDICTED: basic transcription factor 3 isoform 3 [Pan troglodytes]	300.0	[0..1]	[162..45]
gi\|60652869, gi\|... - gi\|60652871\|gb\|AAX29130.1\| basic transcription factor 3 [synthetic construct], gi\|60652869\|gb\|AAX291...	295.0	[0..1]	[162..1]
gi\|149726547 - gi\|149726547\|ref\|XP_001504740.1\| PREDICTED: similar to rCG44623 isoform 2 [Equus caballus] gi\|58760394, gi\|... - gi\|70778873\|ref\|NP_001020485.1\| basic transcription factor 3 [Bos taurus], gi\|58760394\|gb\|AAW82107.1...	295.0	[0..1]	[162..1]
gi\|109499130, gi... - gi\|62659795\|ref\|XP_573521.1\| PREDICTED: similar to basic transcription factor 3 [Rattus norvegicus],...	291.0	[0..1]	[162..1]

Back

Predicted Domain #1

Region A:
Residues: [1-162]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKETIMNQEK LAKLQAQVRI GGKGTARRKK KVVHRTATAD DKKLQFSLKK LGVNNISGIE  60
   61 EVNMFTNQGT VIHFNNPKVQ ASLAANTFTI TGHAETKQLT EMLPSILNQL GADSLTSLRR 120
  121 LAEALPKQSV DGKAPLATGE DDDDEVPDLV ENFDEASKNE AN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.52
Match:	1tr8A
Description:	Crystal Structure of archaeal Nascent Polypeptide-associated Complex (aeNAC)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits