YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|187427344, gi...
Organism:	Shigella boydii CDC 3083-94
Length:	248 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|187427344, gi....

Description	E-value	Query Range	Subject Range
gi\|238798302, gi... - gi\|77961047\|ref\|ZP_00824895.1\| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1...	212.0	[0..1]	[248..1]
gi\|49613715, gi\|... - gi\|50123189\|ref\|YP_052356.1\| ferredoxin-NADP reductase [Pectobacterium atrosepticum SCRI1043], gi\|49...	211.0	[0..1]	[248..1]
gi\|91213465, gi\|... - gi\|91213465\|ref\|YP_543451.1\| ferredoxin-NADP reductase [Escherichia coli UTI89], gi\|91075039\|gb\|ABE0... gi\|115515315, gi... - gi\|117626191\|ref\|YP_859514.1\| ferredoxin-NADP reductase [Escherichia coli APEC O1], gi\|115515315\|gb\|... gi\|226902894, gi... - gi\|237702957\|ref\|ZP_04533438.1\| flavodoxin NADP+ reductase [Escherichia sp. 3_2_53FAA], gi\|226902894... gi\|218367760, gi... - gi\|218560991\|ref\|YP_002393904.1\| ferredoxin-NADP reductase [Escherichia coli S88], gi\|218367760\|emb\|...	210.0	[0..1]	[248..1]
gi\|238789588, gi... - gi\|77972970\|ref\|ZP_00828524.1\| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1...	210.0	[0..1]	[248..1]
gi\|74314424, gi\|... - gi\|74314424\|ref\|YP_312843.1\| ferredoxin-NADP reductase [Shigella sonnei Ss046], gi\|73857901\|gb\|AAZ90...	210.0	[0..1]	[248..1]
FENR_ECOLI - Ferredoxin--NADP reductase (EC 1.18.1.2) (FNR) (Flavodoxin reductase) (FLXR) (FLDR) (Methyl viologen... gi\|254039185, gi... - gi\|254039185\|ref\|ZP_04873235.1\| oxidoreductase FAD/NAD(P)-binding subunit [Escherichia sp. 1_1_43], ... EG11518 - ferredoxin-NADP reductase; flavodoxin reductase / Ferredoxin NADP reductase; FNR; flavodoxin reducta... EG11518 - ferredoxin-NADP reductase; flavodoxin reductase / Ferredoxin NADP reductase; FNR; flavodoxin reducta... gi\|89110105, gi\|... - gi\|89110105\|ref\|AP_003885.1\| ferredoxin-NADP reductase [Escherichia coli str. K-12 substr. W3110], g... gi\|170083394, gi... - gi\|170083394\|ref\|YP_001732714.1\| ferredoxin-NADP reductase [Escherichia coli str. K-12 substr. DH10B... gi\|170022065, gi... - gi\|170022065\|ref\|YP_001727019.1\| ferredoxin-NADP reductase [Escherichia coli ATCC 8739], gi\|16975699... gi\|75197796, gi\|... - gi\|75197796\|ref\|ZP_00707866.1\| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1... gi\|188490547, gi... - gi\|75513890\|ref\|ZP_00736243.1\| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1... gi\|124501287, gi... - gi\|124527585\|ref\|ZP_01699050.1\| oxidoreductase FAD/NAD(P)-binding domain protein [Escherichia coli B...	210.0	[0..1]	[248..1]
gi\|218429772, gi... - gi\|218692208\|ref\|YP_002400420.1\| ferredoxin-NADP reductase [Escherichia coli ED1a], gi\|218429772\|emb... gi\|26250690, gi\|... - gi\|26250690\|ref\|NP_756730.1\| ferredoxin-NADP reductase [Escherichia coli CFT073], gi\|26111121\|gb\|AAN... gi\|110345852, gi... - gi\|110644260\|ref\|YP_671990.1\| ferredoxin-NADP reductase [Escherichia coli 536], gi\|110345852\|gb\|ABG7... gi\|227837710, gi... - gi\|227885334\|ref\|ZP_04003139.1\| ferredoxin-NADP reductase [Escherichia coli 83972], gi\|227837710\|gb\|... gi\|190907047, gi... - gi\|75240317\|ref\|ZP_00724257.1\| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1... gi\|215267327, gi... - gi\|215489255\|ref\|YP_002331686.1\| ferredoxin-NADP reductase [Escherichia coli O127:H6 str. E2348/69],...	210.0	[0..1]	[248..1]
gi\|157831052, gi... - gi\|2554661\|pdb\|1FDR\| Chain , Flavodoxin Reductase From E. Coli, gi\|157831052\|pdb\|1FDR\|A Chain A, F...	210.0	[0..1]	[248..1]
gi\|72609073, gi\|... - gi\|74017897\|ref\|ZP_00688519.1\| Ferredoxin:Oxidoreductase FAD/NAD(P)-binding:Oxidoreductase FAD-bindi...	209.0	[0..7]	[246..110]
gi\|77977388, gi\|... - gi\|77977388\|ref\|ZP_00832838.1\| COG1018: Flavodoxin reductases (ferredoxin-NADPH reductases) family 1...	209.0	[0..1]	[248..1]

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Predicted Domain #1

Region A:
Residues: [1-248]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADWVTGKVT KVQNWTDALF SLTVHAPVLP FTAGQFTKLG LEIDGERVQR AYSYVNSPDN  60
   61 PDLEFYLVTV PDGKLSPRLA ALKPGDEVQV VSEAAGFFVL DEVPDCETLW MLATGTAIGP 120
  121 YLSILQLGKD LDRFKNLVLV HAARYAADLS YLPLMQELEK RYEGKLRIQT VVSRETAAGS 180
  181 LTGRIPALIE SGELESAIGL PMNKETSHVM LCGNPQMVRD TQQLLKETRQ MTKHLRRRPG 240
  241 HMTAEHYW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	54.39794
Match:	1fdrA
Description:	FLAVODOXIN REDUCTASE FROM E. COLI
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.45374095556065	bayes_pls_golite062009
binding	0.450899702470978	bayes_pls_golite062009
coenzyme binding	0.270924422726986	bayes_pls_golite062009
cofactor binding	0.2333379637469	bayes_pls_golite062009
transferase activity	0.00498326987177106	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: