YRC Public Data Repository - Protein Structure Prediction

Protein:	CLPS_RUEPO
Organism:	Ruegeria pomeroyi DSS-3
Length:	113 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CLPS_RUEPO.

Description	E-value	Query Range	Subject Range
CLPS_RUEST - ATP-dependent Clp protease adapter protein ClpS OS=Ruegeria sp. (strain TM1040) GN=clpS PE=3 SV=1	163.0	[0..1]	[113..1]
CLPS_ROSDO - ATP-dependent Clp protease adapter protein ClpS OS=Roseobacter denitrificans (strain ATCC 33942 / OC...	163.0	[0..1]	[113..1]
CLPS_RHOS5 - ATP-dependent Clp protease adapter protein ClpS OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH ...	163.0	[0..1]	[112..1]
gi\|83842926, gi\|... - gi\|83855083\|ref\|ZP_00948613.1\| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp. N... gi\|83941607, gi\|... - gi\|83941607\|ref\|ZP_00954069.1\| ATP-dependent Clp protease, adaptor protein ClpS [Sulfitobacter sp. E...	160.0	[0..1]	[113..1]
gi\|85704460, gi\|... - gi\|85704460\|ref\|ZP_01035562.1\| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp. 217...	159.0	[0..1]	[112..1]
gi\|126104765, gi... - gi\|126463101\|ref\|YP_001044215.1\| ATP-dependent Clp protease adaptor protein ClpS [Rhodobacter sphaer... gi\|221160924, gi... - gi\|221640143\|ref\|YP_002526405.1\| ATP-dependent Clp protease adapter protein clpS [Rhodobacter sphaer... gi\|77464259, gi\|... - gi\|77464259\|ref\|YP_353763.1\| ATP-dependent Clp protease adaptor protein clpS [Rhodobacter sphaeroide...	157.0	[0..8]	[112..1]
gi\|114328313, gi... - gi\|114328313\|ref\|YP_745470.1\| ATP-dependent Clp protease adaptor protein ClpS [Granulibacter bethesd...	157.0	[0..11]	[112..77]
gi\|68191357, gi\|... - gi\|69277480\|ref\|ZP_00612815.1\| ATP-dependent Clp protease adaptor protein ClpS [Mesorhizobium sp. BN...	156.0	[0..1]	[111..18]
gi\|114765842, gi... - gi\|114765842\|ref\|ZP_01444935.1\| ATP-dependent Clp protease, adaptor protein ClpS [Roseovarius sp. HT...	155.0	[0..9]	[112..17]
CLPS_CAUCR - ATP-dependent Clp protease adapter protein ClpS OS=Caulobacter crescentus GN=clpS PE=1 SV=1 CLPS_CAUCR - ATP-dependent Clp protease adapter protein ClpS OS=Caulobacter crescentus (strain ATCC 19089 / CB15)...	155.0	[0..17]	[112..24]

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Predicted Domain #1

Region A:
Residues: [1-113]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTAQLHMMSD KHDQDNDASV LLQTRPRTKR PPLYKVLLLN DDYTPMEFVV HVLERFFGMN  60
   61 HAQAFEIMLT VHKKGVAVVG VFSHEIAETK VSLVMDFARR HQHPLQCTME KED

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.522879
Match:	1mbuC
Description:	Adaptor protein ClpS (YljA)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits