YRC Public Data Repository - Protein Structure Prediction

Protein:	RS6_XANC5
Organism:	Xanthomonas campestris pv. vesicatoria str. 85-10
Length:	143 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS6_XANC5.

Description	E-value	Query Range	Subject Range
gi\|33566505 - gi\|33566505\|emb\|CAE37761.1\| 30s ribosomal protein s6 [Bordetella parapertussis] gi\|33597054 - gi\|33597054\|ref\|NP_884697.1\| 30S ribosomal protein S6 [Bordetella parapertussis 12822] gi\|33568499, gi\|... - gi\|33600899\|ref\|NP_888459.1\| 30S ribosomal protein S6 [Bordetella bronchiseptica RB50], gi\|33568499\|...	161.0	[0..2]	[109..32]
RS6_XANOR - 30S ribosomal protein S6 OS=Xanthomonas oryzae pv. oryzae GN=rpsF PE=3 SV=1 RS6_XANOM - 30S ribosomal protein S6 OS=Xanthomonas oryzae pv. oryzae (strain MAFF 311018) GN=rpsF PE=3 SV=1 RS6_XANOR - 30S ribosomal protein S6 OS=Xanthomonas oryzae pv. oryzae (strain KACC10331 / KXO85) GN=rpsF PE=3 SV... RS6_XANOP - 30S ribosomal protein S6 OS=Xanthomonas oryzae pv. oryzae (strain PXO99A) GN=rpsF PE=3 SV=1	161.0	[0..1]	[143..1]
RS6_XANC8 - 30S ribosomal protein S6 OS=Xanthomonas campestris pv. campestris (strain 8004) GN=rpsF PE=3 SV=1 RS6_XANCP - 30S ribosomal protein S6 OS=Xanthomonas campestris pv. campestris (strain ATCC 33913 / DSM 3586 / NC... RS6_XANCP - 30S ribosomal protein S6 OS=Xanthomonas campestris pv. campestris GN=rpsF PE=3 SV=1	158.0	[0..1]	[143..1]
RS6_CHRSD - 30S ribosomal protein S6 OS=Chromohalobacter salexigens (strain DSM 3043 / ATCC BAA-138 / NCIMB 1376...	158.0	[0..2]	[135..1]
RS6_NITEC - 30S ribosomal protein S6 OS=Nitrosomonas eutropha (strain C91) GN=rpsF PE=3 SV=1	157.0	[0..2]	[142..1]
RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea (strain ATCC 19718 / NBRC 14298) GN=rpsF PE=3 SV=1 RS6_NITEU - 30S ribosomal protein S6 OS=Nitrosomonas europaea GN=rpsF PE=3 SV=1	156.0	[0..2]	[142..1]
RS6_BURXL - 30S ribosomal protein S6 OS=Burkholderia xenovorans (strain LB400) GN=rpsF PE=3 SV=1 RS6_BURPP - 30S ribosomal protein S6 OS=Burkholderia phytofirmans (strain DSM 17436 / PsJN) GN=rpsF PE=3 SV=1 gi\|170692292, gi... - gi\|170692292\|ref\|ZP_02883455.1\| ribosomal protein S6 [Burkholderia graminis C4D1M], gi\|170142722\|gb\|...	156.0	[0..2]	[125..1]
RS6_DECAR - 30S ribosomal protein S6 OS=Dechloromonas aromatica (strain RCB) GN=rpsF PE=3 SV=1	156.0	[0..2]	[110..1]
gi\|90309922, gi\|... - gi\|90408974\|ref\|ZP_01217106.1\| 30S ribosomal protein S6 [Psychromonas sp. CNPT3], gi\|90309922\|gb\|EAS...	155.0	[0..2]	[131..1]
gi\|90414464, gi\|... - gi\|90414464\|ref\|ZP_01222440.1\| 30S ribosomal protein S6 [Photobacterium profundum 3TCK], gi\|90324469...	155.0	[0..2]	[126..1]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRHYEVVFL VHPDQSEQVP AMIERYKSLI EGGNGTIHRL EDWGRRQLAY PIQNLVKAHY  60
   61 VLLNIEVDQA VLSELVESFR FNDAVLRHLV VKRDGADTEQ SLIMKSKDEK GDKPERSERR 120
  121 RRDDEEGEAP AANDNDGDNA EAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1p6gF
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits