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View Structure Prediction Details

Protein: frm-2
Organism: Caenorhabditis elegans
Length: 589 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for frm-2.

Description E-value Query
Range
Subject
Range
frm-2 - band 4.1-like domain status:Partially_confirmed UniProt:Q9GP93 protein_id:AAG01559.2
401.0 [0..17] [589..1]

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Predicted Domain #1
Region A:
Residues: [1-337]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSDEEDENS QREPKDMSWM LRSLSARFSR NRQQQQKSQT QDASFDTKKF VQCKVLLLDG  60
   61 AHLNIVVPRN AVGSELYEEV FYSLDLEERD YFGLQYTDPF NVQHWLDPTK KVAKQVAIGP 120
  121 PFTLRFRVKF FTSEPSSNLK EELTRYQFFL QIKQDISSGR LQCPHQLAIE LAAFALQSEL 180
  181 GDYNPELHTA LFISEFRFHP EQDEKMEVEI LERYKACRGQ TPAQAELNYL NKARWIEMYG 240
  241 VDMHIVEGKD GNTYRLGLTP QGMLVFDGPQ KIGLFLWEKL QKLDFKNKKI TLVVEEDADQ 300
  301 SNNGQIQLHT FVFHLTSEKA AKHFWKCAIE QHAFFRL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 85.0
Match: 2he7A
Description: No description for 2he7A was found.

Predicted Domain #2
Region A:
Residues: [338-589]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSRPIQANRK IQFFRLGSTF KYRGRTEYET IHKEGARLSR RQSCSFERRP SQRYGPRQSH  60
   61 VTNAQIRDAK RAEMRQQIIE QQRANDQQRT HAKSDPTSPH SIIQNVPLPT SPDLKKPVNN 120
  121 SNPFISDPLT PSSSSSSSSH NLSHVTKITV GTIGNLDTPS SSAAPSSYIP RPVVSTSTSF 180
  181 SHPPPLPAHQ SNSKIPRMSS ASEQRKSSQP PQPAVRMQTQ FEEPRKYSQN GCAPPSRIVP 240
  241 PMQHQRRIVT DF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle