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View Structure Prediction Details

Protein: CE39304
Organism: Caenorhabditis elegans
Length: 334 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39304.

Description E-value Query
Range
Subject
Range
gi|187028302, gi... - gi|39585915|emb|CAE68204.1| Hypothetical protein CBG13872 [Caenorhabditis briggsae], gi|187028302|em...
gi|157759213 - gi|157759213|ref|XP_001671950.1| Hypothetical protein CBG13872 [Caenorhabditis briggsae AF16]
252.0 [0..1] [334..1]

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Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHISGKQCP MVLIIRLLLQ LSSTVSAELS RSMTLTYSPQ SIHDLEEYGS TDVNVTLKFP  60
   61 KNEFETENIE HYALSVNSFH PETATADYNT EKLKTEQFRL NGQFYETETI ITINGNLLGK 120
  121 TAMKMRLVPA AEYYNETRSQ FEWKTEKL

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [149-334]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NSPKLAENEP LRGGGGDWLD VWVVRSKESR RLTVYFVISV VVLISMANVM MGCELDIDAV  60
   61 LATLKKPVAP GIGLFAQFII MPLLSYLIAY AIFMPRGLYS MALGLFVTGC SPGGGASNFW 120
  121 TLLLDGNLNL SVTMTFISTI CSLVMMPAWL YFLGHPFLQG FNSTAVIKVK ILEKTAKIAL 180
  181 EIGKSL

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 5.318759
Match: PF01758.7
Description: No description for PF01758.7 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle