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View Structure Prediction Details

Protein: RK33_NICSY
Organism: Nicotiana sylvestris
Length: 66 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RK33_NICSY.

Description E-value Query
Range		 Subject
Range
RK33_PANGI - 50S ribosomal protein L33, chloroplastic OS=Panax ginseng GN=rpl33 PE=3 SV=1
 98.0 [0..1] [66..1]
RK33_NANDO - 50S ribosomal protein L33, chloroplastic OS=Nandina domestica GN=rpl33 PE=3 SV=1
 97.0 [0..1] [66..1]
RK33_PLAOC - 50S ribosomal protein L33, chloroplastic OS=Platanus occidentalis GN=rpl33 PE=3 SV=1
 97.0 [0..1] [66..1]
RK33_ARATH - 50S ribosomal protein L33, chloroplastic OS=Arabidopsis thaliana GN=rpl33 PE=3 SV=1
 97.0 [0..1] [66..1]
RK33_GOSHI - 50S ribosomal protein L33, chloroplastic OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1
RK33_GOSBA - 50S ribosomal protein L33, chloroplastic OS=Gossypium barbadense GN=rpl33 PE=3 SV=1
 97.0 [0..1] [66..1]
RK33_HELAN - 50S ribosomal protein L33, chloroplastic OS=Helianthus annuus GN=rpl33 PE=3 SV=1
 96.0 [0..1] [66..1]
RK33_DRIGR - 50S ribosomal protein L33, chloroplastic OS=Drimys granadensis GN=rpl33 PE=3 SV=1
 96.0 [0..1] [66..1]
RK33_DAUCA - 50S ribosomal protein L33, chloroplastic OS=Daucus carota GN=rpl33 PE=3 SV=1
 96.0 [0..1] [66..1]
RK33_COFAR - 50S ribosomal protein L33, chloroplastic OS=Coffea arabica GN=rpl33 PE=3 SV=1
 96.0 [0..1] [66..1]
RK33_EUCGG - 50S ribosomal protein L33, chloroplastic OS=Eucalyptus globulus subsp. globulus GN=rpl33 PE=3 SV=1
 96.0 [0..1] [66..1]

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Predicted Domain #1
Region A:
Residues: [1-66] 
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKGKDVRVT VILECTSCVR NSVDKVSRGI SRYITQKNRH NTPNRLELKK FCPYCYKHTI  60
   61 HGEIKK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.0
Match: 1nkw1
Description: 50S subunit
Matching Structure (courtesy of the PDB):
YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle