YRC Public Data Repository - Protein Structure Prediction

Protein:	SDO1_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	246 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SDO1_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|47221046 - gi\|47221046\|emb\|CAG12740.1\| unnamed protein product [Tetraodon nigroviridis]	325.0	[0..1]	[245..1]
SBDS_MOUSE - Ribosome maturation protein SBDS OS=Mus musculus GN=Sbds PE=1 SV=4	321.0	[0..1]	[245..1]
SBDS_RAT - Ribosome maturation protein SBDS OS=Rattus norvegicus GN=Sbds PE=2 SV=1	321.0	[0..1]	[245..1]
SBDS_XENTR - Ribosome maturation protein SBDS OS=Xenopus tropicalis GN=sbds PE=2 SV=1	319.0	[0..1]	[245..1]
SBDS_BOVIN - Ribosome maturation protein SBDS OS=Bos taurus GN=SBDS PE=2 SV=1	318.0	[0..1]	[245..1]
SBDS_PONPY - Shwachman-Bodian-Diamond syndrome protein homolog - Pongo pygmaeus (Orangutan) gi\|114613780, gi... - gi\|114613780\|ref\|XP_001141242.1\| PREDICTED: hypothetical protein isoform 2 [Pan troglodytes], gi\|114... SBDS - Shwachman-Bodian-Diamond syndrome SBDS_PONAB - Ribosome maturation protein SBDS OS=Pongo abelii GN=SBDS PE=2 SV=1	317.0	[0..1]	[245..1]
SBDS_CHICK - Ribosome maturation protein SBDS OS=Gallus gallus GN=SBDS PE=2 SV=1	314.0	[0..1]	[245..1]
gi\|48129273 - gi\|48129273\|ref\|XP_396646.1\| PREDICTED: similar to Shwachman-Bodian-Diamond syndrome protein [Apis m...	313.0	[0..3]	[244..7]
gi\|55237824, gi\|... - gi\|58390269\|ref\|XP_317609.2\| ENSANGP00000009959 [Anopheles gambiae str. PEST], gi\|55237824\|gb\|EAA127...	311.0	[0..3]	[245..4]

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Predicted Domain #1

Region A:
Residues: [1-246]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVISQPVGQI RLTNVSVVKY KKGGKRFEVA CYKNKVTEWR NKIETDLDEV LQIHNVFNNV  60
   61 SKGHVASRQD LKKAFGTDDI DKIILEILQK GDFQVGEKER HHQMSSTYRD IVSHVTAMCM 120
  121 DPNSKRPYPA SIIEKALSDC GFSVSTSKTA KSQALEAIKK LQEKNEIPIV RARMRIRIVV 180
  181 DVKQGKALRE RLRSLADEIE EENIDDEYEC IALVIPGNYK LIDELVRNET KNRGMVQVLD 240
  241 MSEART

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	77.30103
Match:	1p9qC
Description:	Structure of a hypothetical protein AF0491 from Archaeoglobus fulgidus
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits