YRC Public Data Repository - Protein Structure Prediction

Protein:	RNP3_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RNP3_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|159123707 - gi\|159123707\|gb\|EDP48826.1\| ribonuclease P complex subunit Pop2, putative [Aspergillus fumigatus A11... gi\|70983522, gi\|... - gi\|70983522\|ref\|XP_747288.1\| ribonuclease P complex subunit Pop2 [Aspergillus fumigatus Af293], gi\|6...	210.0	[0..1]	[234..1]
gi\|114631777 - gi\|114631777\|ref\|XP_521557.2\| PREDICTED: ribonuclease P (30kD) [Pan troglodytes]	209.0	[0..13]	[234..12]
gi\|73997973 - gi\|73997973\|ref\|XP_534959.2\| PREDICTED: similar to Ribonuclease P protein subunit p30 (RNaseP protei...	208.0	[0..13]	[234..12]
gi\|109089903 - gi\|109089903\|ref\|XP_001087609.1\| PREDICTED: ribonuclease P (30kD) [Macaca mulatta]	208.0	[0..2]	[234..4]
gi\|7490291 - gi\|7490291\|pir\|\|T38672 conserved hypothetical protein SPAC3A12.04c - fission yeast (Schizosaccharom...	208.0	[0..26]	[235..7]
RPP30_BOVIN - Ribonuclease P protein subunit p30 OS=Bos taurus GN=RPP30 PE=2 SV=1	207.0	[0..13]	[234..12]
RPP30 - ribonuclease P/MRP 30kDa subunit gi\|60656497, gi\|... - gi\|60656497\|gb\|AAX32812.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct], gi\|123999957\|gb\|A...	206.0	[0..13]	[234..12]
gi\|60653449 - gi\|60653449\|gb\|AAX29419.1\| ribonuclease P/MRP 30kDa subunit [synthetic construct]	205.0	[0..13]	[234..12]
gi\|42476125, gi\|... - gi\|42476125\|ref\|NP_062301.2\| ribonuclease P/MRP 30kDa subunit [Mus musculus], gi\|38566076\|gb\|AAH6214...	205.0	[0..13]	[234..12]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIDLNVVWP TLGVKDLNLV KTVKTLERLG YTAIALNYQY DGKLQNVIKN PIVKELYPEQ  60
   61 KIKIYSRITL TIESMPQNKV LSNVTKEFDI LAIRPIGDRL LQQTCSDLEF DILSIDFTQR 120
  121 LPFYLKHTFM GLAVSRDIGI EISYSSGLRD VSNRRNLITN ATSLVRATRG RGIIVTSETR 180
  181 TPLECRAGFD VINLATFWDL KQDQARKSVG ESCRSVLLHA ETRRDTYRSI LNGCH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	1m65A
Description:	Hypothetical protein YcdX
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits