YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|83748148, gi\|...
Organism:	Ralstonia solanacearum UW551
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|83748148, gi|....

Description	E-value	Query Range	Subject Range
gi\|52426104, gi\|... - gi\|52426104\|ref\|YP_089241.1\| 30S ribosomal protein S10 [Mannheimia succiniciproducens MBEL55E], gi\|5...	159.0	[0..1]	[103..19]
gi\|83312230, gi\|... - gi\|83312230\|ref\|YP_422494.1\| Ribosomal protein S10 [Magnetospirillum magneticum AMB-1], gi\|82947071\|...	159.0	[0..2]	[103..24]
gi\|48871257 - gi\|48871257\|ref\|ZP_00323973.1\| COG0051: Ribosomal protein S10 [Pediococcus pentosaceus ATCC 25745]	158.0	[0..2]	[103..41]
gi\|1075260 - gi\|1075260\|pir\|\|D64092 ribosomal protein S10 - Haemophilus influenzae (strain Rd KW20) gi\|46133133 - gi\|46133133\|ref\|ZP_00156632.2\| COG0051: Ribosomal protein S10 [Haemophilus influenzae R2866] gi\|48868599 - ref\|ZP_00321912.1\| COG0051: Ribosomal protein S10 [Haemophilus influenzae 86-028NP] gi\|1573786, gi\|1... - gi\|16272717\|ref\|NP_438935.1\| 30S ribosomal protein S10 [Haemophilus influenzae Rd KW20], gi\|1573786\|...	157.0	[0..1]	[103..15]
RS10_ALCBS - 30S ribosomal protein S10 OS=Alcanivorax borkumensis (strain ATCC 700651 / DSM 11573 / NCIMB 13689 /... gi\|254426922, gi... - gi\|254426922\|ref\|ZP_05040629.1\| ribosomal protein S10 [Alcanivorax sp. DG881], gi\|223479174\|ref\|YP_0...	153.0	[0..2]	[103..1]
RS10_PSYWF - 30S ribosomal protein S10 OS=Psychrobacter sp. (strain PRwf-1) GN=rpsJ PE=3 SV=1	153.0	[0..2]	[103..1]
RS10_SHESA - 30S ribosomal protein S10 OS=Shewanella sp. (strain ANA-3) GN=rpsJ PE=3 SV=1 RS10_SHELP - 30S ribosomal protein S10 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=rpsJ PE=3 SV=1 SO0230 - ribosomal protein S10 RS10_SHEON - 30S ribosomal protein S10 OS=Shewanella oneidensis (strain MR-1) GN=rpsJ PE=3 SV=1 RS10_SHESR - 30S ribosomal protein S10 OS=Shewanella sp. (strain MR-7) GN=rpsJ PE=3 SV=1 RS10_SHESM - 30S ribosomal protein S10 OS=Shewanella sp. (strain MR-4) GN=rpsJ PE=3 SV=1	153.0	[0..2]	[103..1]
gi\|85692800, gi\|... - gi\|85713372\|ref\|ZP_01044381.1\| 30S ribosomal protein S10 [Idiomarina baltica OS145], gi\|85692800\|gb\|...	153.0	[0..2]	[103..1]
RS10_RHOPB - 30S ribosomal protein S10 OS=Rhodopseudomonas palustris (strain BisB18) GN=rpsJ PE=3 SV=1	153.0	[0..2]	[103..1]
RS10_IDILO - 30S ribosomal protein S10 OS=Idiomarina loihiensis GN=rpsJ PE=3 SV=1 RS10_IDILO - 30S ribosomal protein S10 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rpsJ...	153.0	[0..2]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQNQKIRIR LKAFDYRLID QSAAEIVETA KRTGAIVKGP VPLPTRIQRF DVLRSPHVNK  60
   61 TSRDQFEIRT HQRLMDIVDP TDKTVDALMK LDLPAGVDVE IKLQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	37.0
Match:	1p6gJ
Description:	70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.82905885280588	bayes_pls_golite062009
structural molecule activity	9.25405593567362	bayes_pls_golite062009
binding	0.795193544824207	bayes_pls_golite062009
RNA binding	0.60427462690745	bayes_pls_golite062009
nucleic acid binding	0.513619902565835	bayes_pls_golite062009
protein binding	0.180450584965049	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: