YRC Public Data Repository - Protein Structure Prediction

Protein:	POP5_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for POP5_SCHPO.

Description	E-value	Query Range	Subject Range
POP5_MOUSE - Ribonuclease P/MRP protein subunit POP5 OS=Mus musculus GN=Pop5 PE=1 SV=1	152.0	[0..1]	[136..1]
POP5_BOVIN - Ribonuclease P/MRP protein subunit POP5 OS=Bos taurus GN=POP5 PE=2 SV=1	152.0	[0..1]	[136..1]
POP5 - processing of precursor 5, ribonuclease P/MRP subunit (S. cerevisiae) gi\|109098960 - gi\|109098960\|ref\|XP_001089950.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP... gi\|114647330 - gi\|114647330\|ref\|XP_509430.2\| PREDICTED: processing of precursor 5, ribonuclease P/MRP subunit isofo...	151.0	[0..1]	[136..1]
gi\|73994750 - gi\|73994750\|ref\|XP_534710.2\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP sub...	146.0	[0..1]	[136..1]
orf19.275, orf19... - orf19.275 CGDID:CAL0004064 Assembly 19, Contig19-10046 (89182, 89754) CDS, translated using codon ta... gi\|46441957, gi\|... - gi\|68471860\|ref\|XP_719973.1\| potential RNAseP/MRP complex component [Candida albicans SC5314], gi\|68...	146.0	[0..1]	[135..1]
POP5_ARATH - Probable ribonuclease P/MRP protein subunit POP5 OS=Arabidopsis thaliana GN=EMB1687 PE=2 SV=1	144.0	[0..1]	[138..1]
gi\|109497347, gi... - gi\|27666062\|ref\|XP_213794.1\| PREDICTED: similar to processing of precursor 5, ribonuclease P/MRP fam...	142.0	[0..1]	[136..1]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVRFKSRYLL FEVLYPEAKE FFDYPTIPSD SSITTSSLSK IIRTMVAENF GDVGIGKVAS  60
   61 SLTVKYFSPN TSTGILRVSR QHFRLAWAAL VLIRELYGKP VIIRVVRVSG TIKKAELAAI 120
  121 ERNKSEIHNI SLMDEPIEV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	2czvC
Description:	No description for 2czvC was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits