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View Structure Prediction Details

Protein: SEN54_SCHPO
Organism: Schizosaccharomyces pombe 972h-
Length: 384 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SEN54_SCHPO.

Description E-value Query
Range
Subject
Range
gi|46109196, gi|... - gi|46109196|ref|XP_381656.1| hypothetical protein FG01480.1 [Gibberella zeae PH-1], gi|42546022|gb|E...
380.0 [0..1] [372..1]
SE54_ASHGO, SEN5... - tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii GN=SEN54 PE=3 SV=1, (Q74ZJ5) tRNA-splici...
SEN54_ASHGO - tRNA-splicing endonuclease subunit SEN54 OS=Ashbya gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9...
379.0 [0..15] [375..16]
gi|67523987, gi|... - gi|67523987|ref|XP_660053.1| hypothetical protein AN2449.2 [Aspergillus nidulans FGSC A4], ref|XP_40...
351.0 [0..1] [347..4]
gi|83768654 - gi|83768654|dbj|BAE58791.1| unnamed protein product [Aspergillus oryzae]
gi|169772649 - gi|169772649|ref|XP_001820793.1| hypothetical protein [Aspergillus oryzae RIB40]
300.0 [0..1] [373..1]
SE54_NEUCR, SEN5... - Probable tRNA-splicing endonuclease subunit sen-54 OS=Neurospora crassa GN=sen-54 PE=3 SV=1, (Q7SC91...
SEN54_NEUCR - Probable tRNA-splicing endonuclease subunit sen-54 OS=Neurospora crassa (strain ATCC 24698 / 74-OR23...
298.0 [0..1] [369..3]
gi|46438274, gi|... - gi|68478667|ref|XP_716602.1| potential tRNA splicing endonuclease subunit [Candida albicans SC5314],...
orf19.7361 - orf19.7361 CGDID:CAL0004706 Assembly 19, Contig19-2513 (30399, 31817) CDS, translated using codon ta...
295.0 [0..14] [360..39]
gi|114195627, gi... - gi|115388075|ref|XP_001211543.1| conserved hypothetical protein [Aspergillus terreus NIH2624], gi|11...
294.0 [0..16] [384..20]
gi|70992187, gi|... - gi|70992187|ref|XP_750942.1| tRNA splicing endonuclease subunit (Sen54) [Aspergillus fumigatus Af293...
284.0 [0..1] [373..4]
SEN54 - Subunit of the tRNA splicing endonuclease, which is composed of Sen2p, Sen15p, Sen34p, and Sen54p
SEN54_YEAST - tRNA-splicing endonuclease subunit SEN54 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN...
270.0 [0..2] [316..9]
gi|90298873, gi|... - gi|90298873|gb|EAS28504.1| hypothetical protein CIMG_09708 [Coccidioides immitis RS], gi|119175869|r...
252.0 [0..16] [364..22]

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Predicted Domain #1
Region A:
Residues: [1-99]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAQDEDNPF TNLETTVDVT EEIQDWRFLS NVEKDQGTYT IPKRGQKDFE PDGTNKQHSA  60
   61 LDLSRKAMFD ALSVERLISA KHAIIATWNA QNGMSCVEK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [100-254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AHGPLFKTMG TADSQNRMWL LPEETLYLVE RGSMECWSEE GLPMSLQAVY SASIPLCGSL  60
   61 ENYLVYAHLR RCGFSVIRSN LVPVKEDEYR CDSKIMNFKD LLFLGLGKAS QILQTFNFRK 120
  121 LAFPFSKRRR QSILLHDTFY TYEEVYHDLQ IVRGY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.39794
Match: 2cv8A
Description: Crystal structure of tRNA-intron endonuclease from Sulfolobus tokodaii
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [255-384]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPIACNLITS SDSLFQITFH AYKPSASFKK SALSEPDFRI CVVSSQDTLL PTIFEIDALF  60
   61 SSTPLRQNMP QHMFQRLKEG YRNIIIAIVD YGVISYIRLS DVCFEEKVYT DFSKKGSKRK 120
  121 RVSKKFQQLV 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle