YRC Public Data Repository - Protein Structure Prediction

Protein:	YCJ5_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	323 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCJ5_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|75709356, gi\|... - gi\|75709356\|gb\|ABA26697.1\| TapA [Emericella nidulans], gi\|47824784\|emb\|CAG30553.1\| TapA protein [Eme...	308.0	[0..2]	[323..3]
gi\|42554819, gi\|... - gi\|46136569\|ref\|XP_389976.1\| hypothetical protein FG09800.1 [Gibberella zeae PH-1], gi\|42554819\|gb\|E...	300.0	[0..2]	[323..5]
gi\|67515677, gi\|... - gi\|67515677\|ref\|XP_657724.1\| hypothetical protein AN0120.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	298.0	[0..2]	[323..3]
gi\|51479181 - gi\|51479181\|ref\|NP_032810.2\| immunoglobulin (CD79A) binding protein 1 [Mus musculus]	298.0	[0..10]	[317..17]
gi\|61369184, gi\|... - gi\|61369184\|gb\|AAX43297.1\| immunoglobulin [synthetic construct], gi\|30584781\|gb\|AAP36643.1\| Homo sap...	297.0	[0..1]	[317..7]
gi\|61359007, gi\|... - gi\|61359015\|gb\|AAX41655.1\| immunoglobulin binding protein 1 [synthetic construct], gi\|61359007\|gb\|AA... IGBP1 - immunoglobulin (CD79A) binding protein 1	297.0	[0..1]	[317..7]
TAP46_ARATH - PP2A regulatory subunit TAP46 OS=Arabidopsis thaliana GN=TAP46 PE=1 SV=2	294.0	[0..1]	[319..6]
IGBP1_RAT - Immunoglobulin-binding protein 1 OS=Rattus norvegicus GN=Igbp1 PE=2 SV=2	289.0	[0..10]	[317..17]

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Predicted Domain #1

Region A:
Residues: [1-255]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESKSLRELW EETEKLKDSS STDEKTRSEI VEGYEKCLKL VLQLRIFSSN EEVDEIKTSE  60
   61 LRYLMIDYEL AKCVEQWTKG DRLKAVQYAK THYETFLSIC DDYGLKPMQD EKPKTEADTR 120
  121 TLKIARYRMR QNLEKELKAL SKDSETNEEQ ERKFWLTKLQ IAVEDTLDSL PHIEMEIDLL 180
  181 KRAQAELMKS EDSPEKDEET LRREERKQKE GSSWRLDLNT RDKILDKNNR PLQPFTIVSD 240
  241 RNETRKNVFG FGYNL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.69897
Match:	2v0pA
Description:	No description for 2v0pA was found.

Predicted Domain #2

Region A:
Residues: [256-323]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PTMTVDEYLD EEMKRGNIIS QKDNPPKSDS DDEDDYEKLD AKTMKDRYWD EFKEANPRGS  60
   61 GNTMVNRG

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits