YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: polh-1
Organism: Caenorhabditis elegans
Length: 584 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for polh-1.

Description E-value Query
Range
Subject
Range
gi|157773007 - gi|157773007|ref|XP_001664568.1| hypothetical protein CBG11743 [Caenorhabditis briggsae AF16]
gi|187030049, gi... - gi|39584060|emb|CAE66466.1| Hypothetical protein CBG11743 [Caenorhabditis briggsae], gi|187030049|em...
365.0 [0..1] [582..1]

Back

Predicted Domain #1
Region A:
Residues: [1-437]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRVISLIDM DCFYAQVEQR DNPSLWGQPV IVVQHSRQGI EGGILAVSYE ARPFGVKRGM  60
   61 TVAEAKLKCP QISICHVPIG EYVDKADIQK YRDASAEVFR VLNNYDSQII IEKASVDEAF 120
  121 LDLSAYTNQK LQELRENEGL EEFLQAAITY LPTTHLATGE DVKENEHLRE DVLLEYIENA 180
  181 RNCTENLLLL IAAVTVEQIR QQIHEETQFF CSAGVGNNKM MAKLVCARHK PRQQTLIPWF 240
  241 YVREILRLTP IGDVRGFGGK MGNRIQEMLN ITLMGELLEV DISQLIETFP NQHEYLRSVA 300
  301 EGHCDEPVRP RKESSSIAVS KNFPGKLSIR SVLELKKWLD GLTKELAKRL ATDQAENKRT 360
  361 AENLVYSLLT EDGKPQKTLK ITSYHPDTLF EQIWAAMKGL NKTNATKNED SGPWTPPILN 420
  421 ISLSATRFQP GIPAQNR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 81.39794
Match: 2oh2A
Description: No description for 2oh2A was found.

Predicted Domain #2
Region A:
Residues: [438-498]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SIHEWLYEKK TRKSRRKAAI YDENDGREDV IFVEPPEKLK KPNPTPKSTG TDGDFIVLGS  60
   61 D

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [499-584]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SDDDVVQPKT DDNWIFVDGK KFSKMAWRHL PPDIKKHYQH RIALEEARAL KSKTGGSRKR  60
   61 AGAHTDNAQK PKKPKSLESF FKKKKP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle