YRC Public Data Repository - Protein Structure Prediction

Protein:	PSD_VIBC3
Organism:	Vibrio cholerae O395
Length:	285 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PSD_VIBC3.

Description	E-value	Query Range	Subject Range
PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus GN=psd PE=3 SV=1 PSD_VIBVY - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain YJ016) GN=psd PE=3 SV=1 PSD_VIBVU - Phosphatidylserine decarboxylase proenzyme OS=Vibrio vulnificus (strain CMCP6) GN=psd PE=3 SV=1	390.0	[0..1]	[284..1]
PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus GN=psd PE=3 SV=1 PSD_VIBPA - Phosphatidylserine decarboxylase proenzyme OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 22...	389.0	[0..1]	[284..1]
gi\|91228389, gi\|... - gi\|91228389\|ref\|ZP_01262315.1\| phosphatidylserine decarboxylase [Vibrio alginolyticus 12G01], gi\|911...	382.0	[0..1]	[284..1]
gi\|218708315, gi... - gi\|218708315\|ref\|YP_002415936.1\| phosphatidylserine decarboxylase [Vibrio splendidus LGP32], gi\|2183... gi\|85834928, gi\|... - gi\|86147213\|ref\|ZP_01065528.1\| phosphatidylserine decarboxylase [Vibrio sp. MED222], gi\|85834928\|gb\|...	382.0	[0..1]	[283..1]
gi\|84378255, gi\|... - gi\|84386965\|ref\|ZP_00989989.1\| phosphatidylserine decarboxylase [Vibrio splendidus 12B01], gi\|843782...	381.0	[0..1]	[283..1]
PSD_VIBF1 - Phosphatidylserine decarboxylase proenzyme OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=psd PE...	374.0	[0..2]	[283..3]
PSD_PHOPR - Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum GN=psd PE=3 SV=1 PSD_PHOPR - Phosphatidylserine decarboxylase proenzyme OS=Photobacterium profundum (strain SS9) GN=psd PE=3 SV=1	373.0	[0..1]	[282..2]
gi\|90413342, gi\|... - gi\|90413342\|ref\|ZP_01221335.1\| phosphatidylserine decarboxylase [Photobacterium profundum 3TCK], gi\|...	372.0	[0..1]	[282..2]
gi\|90437497, gi\|... - gi\|90581258\|ref\|ZP_01237055.1\| phosphatidylserine decarboxylase [Vibrio angustum S14], gi\|90437497\|g...	370.0	[0..1]	[282..2]
gi\|75256215, gi\|... - gi\|75256215\|ref\|ZP_00727903.1\| COG0688: Phosphatidylserine decarboxylase [Escherichia coli E22], gi\|...	366.0	[0..1]	[282..2]

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Predicted Domain #1

Region A:
Residues: [1-58]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDKIKVGLQY WIPQHALTRL VGKLASARAG SLTTAIIRWF IKQYNVNMDE ALHSDPTH

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [59-285]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FKTFNEFFVR ELKAGVRPIA EGEKVITHPA DACVSQFGAI EYGKLIQAKG HTYSAQELLG  60
   61 GDAKLAEEFR DGDFATLYLS PRDYHRVHMP CDGTLRQMIY VPGDLFSVNP LTAENVPNLF 120
  121 ARNERVVCIF DTEFGPMAQV LVGATIVGSI ELVWAGTVTP PRGNTVYRWD YPANGNQAVV 180
  181 LKKGEEMGRF KLGSTVINLF AKQAIRFDDS MALGAPTRMG EPYAHQA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.26
Match:	2gprA
Description:	GLUCOSE PERMEASE IIA FROM MYCOPLASMA CAPRICOLUM
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.674366586819828	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: