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View Structure Prediction Details

Protein: YSL3_ARATH
Organism: Arabidopsis thaliana
Length: 675 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YSL3_ARATH.

Description E-value Query
Range
Subject
Range
gi|9759194, gi|1... - gi|9759194|dbj|BAB09731.1| EspB-like protein [Arabidopsis thaliana], gi|15238775|ref|NP_200167.1| ol...
515.0 [0..1] [675..1]
gi|82468795 - gi|82468795|gb|ABB76763.1| YSL transporter 3 [Thlaspi caerulescens]
509.0 [0..2] [671..3]
gi|66009973 - gi|66009973|gb|AAT09976.1| putative YS1-like protein; VvYS1 [Vitis vinifera]
487.0 [0..11] [671..2]
gi|92886590 - gi|92886590|gb|ABE88400.1| OPT oligopeptide transporter protein [Medicago truncatula]
487.0 [0..1] [671..4]
gi|116310949 - gi|116310949|emb|CAH67886.1| OSIGBa0153E02-OSIGBa0093I20.15 [Oryza sativa (indica cultivar-group)]
YSL12_ORYSJ - Probable metal-nicotianamine transporter YSL12 OS=Oryza sativa subsp. japonica GN=YSL12 PE=2 SV=2
486.0 [0..25] [675..55]
gi|115459700, gi... - gi|115459700|ref|NP_001053450.1| Os04g0542800 [Oryza sativa (japonica cultivar-group)], gi|113565021...
486.0 [0..2] [672..61]

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Predicted Domain #1
Region A:
Residues: [1-68]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSMMMEREG RNEIEREVID DLEETQNEGD DFKSIPPWKE QITFRGIVAS LIIGIIYSVI  60
   61 VMKLNLTT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [69-371]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GLVPNLNVSA ALLAFVFLRS WTKLLTKAGI VTKPFTKQEN TVVQTCAVAC YSIAVGGGFG  60
   61 SYLLGLNRIT YEQSGGTHTD GNYPEGTKEP GIGWMTAFLF FTCFVGLLAL VPLRKIMIID 120
  121 YKLTYPSGTA TAVLINGFHT PKGNKMAKKQ VFGFVKYFSF SFIWAFFQWF FSGGTECGFI 180
  181 QFPTFGLEAL KNTFYFDFSM TYVGAGMICP HIVNISLLFG AVLSWGIMWP LIKGLKGDWF 240
  241 PSTLPENSMK SLNGYKVFIS ISLILGDGLY QFIKILFKTG INMYVKLNNR NSGKSNSEKD 300
  301 KQS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [372-526]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IADLKRDEIF VRDSIPLWVA AVGYAAFSVV SIIAIPIMFP ELKWYFIVVA YMLAPSLGFS  60
   61 NAYGAGLTDM NMAYNYGKVA LFILAAMAGK QNGVVAGLVG CGLIKSIVSI SSDLMHDFKT 120
  121 GHLTLTSPRS MLVSQAIGTA IGCVVAPLTF FLFYK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [527-675]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AFDVGNQEGE YKAPYALVYR NMAILGVEGF SALPQHCLQL CYGFFAFAVA ANLVRDRLPD  60
   61 KIGNWVPLPM AMAVPFLVGG YFAIDMCVGS LIVFAWNMRD RVKAGLMVPA VASGLICGDG 120
  121 LWILPSSVLA LAGVRPPICM GFMPSKYSS

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle