YRC Public Data Repository - Protein Structure Prediction

Protein:	CWC21_ASHGO
Organism:	Ashbya gossypii ATCC 10895
Length:	125 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CWC21_ASHGO.

Description	E-value	Query Range	Subject Range
gi\|72124562, gi\|... - gi\|72124562\|ref\|XP_789188.1\| PREDICTED: similar to LOC445830 protein [Strongylocentrotus purpuratus]...	134.0	[0..3]	[123..2]
gi\|94402499 - gi\|94402499\|ref\|XP_997406.1\| PREDICTED: similar to serine/arginine repetitive matrix 2 [Mus musculus...	126.0	[0..3]	[122..2]
gi\|197247064, gi... - gi\|63100580\|gb\|AAH95137.1\| Srrm2 protein [Danio rerio], gi\|197247064\|gb\|AAI65030.1\| Srrm2 protein [D...	126.0	[0..3]	[102..2]
CWC21_USTMA - Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=CWC21 PE=3 SV=1 CWC21_USTMA - Pre-mRNA-splicing factor CWC21 OS=Ustilago maydis GN=CWC21 PE=3 SV=1	126.0	[0..3]	[121..2]
gi\|67540832, gi\|... - gi\|67540832\|ref\|XP_664190.1\| hypothetical protein AN6586.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	125.0	[0..1]	[118..1]
gi\|47217980 - gi\|47217980\|emb\|CAG02263.1\| unnamed protein product [Tetraodon nigroviridis]	125.0	[0..3]	[114..2]
gi\|49641108 - gi\|49641108\|emb\|CAH02369.1\| KLLA0B10054p [Kluyveromyces lactis] gi\|49641108, gi\|... - gi\|50304053\|ref\|XP_451976.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641108\|emb\|CAH0236...	124.0	[0..1]	[111..39]
gi\|91090880 - gi\|91090880\|ref\|XP_973129.1\| PREDICTED: similar to CG7971 CG7971-PC [Tribolium castaneum]	122.0	[0..3]	[109..2]
gi\|110755146 - gi\|110755146\|ref\|XP_001121772.1\| PREDICTED: similar to CG7971-PC, isoform C [Apis mellifera]	121.0	[0..3]	[101..2]
gi\|76652679 - gi\|76652679\|ref\|XP_587832.2\| PREDICTED: similar to splicing coactivator subunit SRm300 [Bos taurus]	120.0	[0..3]	[122..165]

Back

Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSYNGIGLKT AKGSSTSGHI QRSLADNQAG NVKNFSSRKE ESQGRVARAS RERKLDGSMA  60
   61 AHADRREIEV RVSELRDELE DADIDAEEIE RRCEQLRRQL QSEAAERARV AQAYTPRNAR 120
  121 SAGAT

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	2p32A
Description:	No description for 2p32A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits