YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: l(3)82Fd-PM
Organism: Drosophila melanogaster
Length: 1012 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for l(3)82Fd-PM.

Description E-value Query
Range
Subject
Range
l(3)82Fd-PO - The gene l(3)82Fd is referred to in FlyBase by the symbol Dmel\l(3)82Fd (CG32464, FBgn0013576). It i...
528.0 [0..39] [1012..53]

Back

Predicted Domain #1
Region A:
Residues: [1-127]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVELIEIYWH MPTNEFSVIY HCRQQVPPTG VICSHLRPDG DSFEVFQQRA PKKHDPPRQK  60
   61 SSLPTIPTIS YTVGNRDTLT SVAARFDTTP SELTHLNRLN SSFIYPGQQL LVPDKSAKDD 120
  121 ASSSSTH

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.47
Match: 2djpA
Description: No description for 2djpA was found.

Predicted Domain #2
Region A:
Residues: [128-219]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DADGASLSGK SSPVERKLSG DESREKDILE GLRPGSPKPG HIERVGGSSQ QQQAEEEANK  60
   61 SDDPVITQRF LKINVRHITD GQGVVGGVLL VT

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [220-449]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNAVMFDPNV SDPLVIEHGP ESYGVIAPME LVVNAAIFHD IAHMRVAGGA GQGLNSASGD  60
   61 AEKPEIYYPK PVLVEEDSKE LPEQQSLLGE DGNKRLDAEI GSLEIADDQE SLCSSTGRDG 120
  121 DAFPKAFDRE RVEDSSMEAK DSAKTDALDD EDKKAGLGLS STRSTLEERR KSLLDHHWAI 180
  181 PSKDRSSEDE GDNESNVTVD SGARVQDPHS ANSSVSGVPL SQPPVAAAAA 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [450-655]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AAAVAPASAV VPLPPSGIDL EHLEQLSKQS CYDSGIDIRE PVPNVQPIPK KTVYSDADIV  60
   61 LSSDWVPPKT IVPTHFSESP PRSTILGQSL DAGTGGAGGV RKKTSSVSFS VDDEAAQQAQ 120
  121 AQSAALAVTD KQADKKNKML KRLSYPLTWV EGLTGEGGAV PPGGVGSGSL NKSGDTDSAP 180
  181 NTGDSNQSVF SKVFSRRSSI GTFIRP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [656-846]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HSSEGTSSST KLKEAKQAPK LDYRSMVSMD DKPELFISVD KLIPRPARAC LDPPLYLRLR  60
   61 MGKPIGKAIP LPTSVMSYGK NKLRAEYWFS VPKNRVDELY RFINTWVKHL YGELDEEQIK 120
  121 ARGFELIQED TEWTKSGTTK AGMGGGSQDG EEISDLTRES WEVLSMSTDE YRKTSLFATG 180
  181 SFDLDFPIPD L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [847-1012]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IGKTEILTEE HREKLCSHLP ARAEGYSWSL IFSTSQHGFA LNSLYRKMAR LESPVLIVIE  60
   61 DTEHNVFGAL TSCSLHVSDH FYGTGESLLY KFNPSFKVFH WTGENMYFIK GNMESLSIGA 120
  121 GDGRFGLWLD GDLNQGRSQQ CSTYGNEPLA PQEDFVIKTL ECWAFV

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle