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View Structure Prediction Details

Protein: Cha-PB
Organism: Drosophila melanogaster
Length: 714 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for Cha-PB.

Description E-value Query
Range
Subject
Range
gi|73983578 - gi|73983578|ref|XP_533208.2| PREDICTED: similar to Carnitine O-palmitoyltransferase I, mitochondrial...
822.0 [0..6] [712..186]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNEASTSA AGSGPESAAL FSKLRSFSIG SGPNSPQRVV SNLRGFLTHR LSNITPSDTG  60
   61 WKDSILSIPK KWLSTAE

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-714]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SVDEFGFPDT LPKVPVPALD ETMADYIRAL EPITTPAQLE RTKELIRQFS APQGIGARLH  60
   61 QYLLDKREAE DNWAYYYWLN EMYMDIRIPL PINSNPGMVF PPRRFKTVHD VAHFAARLLD 120
  121 GILSHREMLD SGELPLERAA SREKNQPLCM AQYYRLLGSC RRPGVKQDSQ FLPSRERLND 180
  181 EDRHVVVICR NQMYCVVLQA SDRGKLSESE IASQILYVLS DAPCLPAKPV PVGLLTAEPR 240
  241 STWARDREML QEDERNQRNL ELIETAQVVL CLDEPLAGNF NARGFTGATP TVHRAGDRDE 300
  301 TNMAHEMIHG GGSEYNSGNR WFDKTMQLII CTDGTWGLCY EHSCSEGIAV VQLLEKIYKK 360
  361 IEEHPDEDNG LPQHHLPPPE RLEWHVGPQL QLRFAQASKS VDKCIDDLDF YVYRYQSYGK 420
  421 TFIKSCQVSP DVYIQLALQL AHYKLYGRLV ATYESASTRR FLHGRVDCIR AASTEALEWA 480
  481 KAMCQGEGAN VPLESDREDE EESRKKDHLR ELFRCAVARQ TEVMVKNILG NGIDIPLLGL 540
  541 REASIEVTGE MHELFKDESY IISQCFLLST SQVACSTDSF MGYGPVTPRG YGCSYNPHPE 600
  601 QIVFCVSAFY SCEDTSASRY AKSLQDSLDI MRDLLQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 1000.0
Match: 2fy2A
Description: No description for 2fy2A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle