YRC Public Data Repository - Protein Structure Prediction

Protein:	SPEH_GEOKA
Organism:	Geobacillus kaustophilus HTA426
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPEH_GEOKA.

Description	E-value	Query Range	Subject Range
gi\|52081404, gi\|... - gi\|52081404\|ref\|YP_080195.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus licheniformis AT...	187.0	[0..1]	[123..1]
gi\|89084915, gi\|... - gi\|89100396\|ref\|ZP_01173260.1\| S-adenosylmethionine decarboxylase proenzyme [Bacillus sp. NRRL B-149...	182.0	[0..1]	[123..1]
SPEH_BACSU - S-adenosylmethionine decarboxylase proenzyme OS=Bacillus subtilis GN=speD PE=1 SV=1 gi\|2635366, gi\|1... - gi\|2635366\|emb\|CAB14861.1\| S-adenosylmethionine decarboxylase [Bacillus subtilis subsp. subtilis str...	182.0	[0..1]	[123..3]
SPEH_CARHZ - S-adenosylmethionine decarboxylase proenzyme OS=Carboxydothermus hydrogenoformans (strain ATCC BAA-1...	174.0	[0..1]	[124..1]
SPH1_BACHD, SPEH... - (Q9K859) S-adenosylmethionine decarboxylase proenzyme 1 (EC 4.1.1.50) (AdoMetDC 1) (SamDC 1) [Contai... SPEH2_BACHD - S-adenosylmethionine decarboxylase proenzyme 2 OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 181...	173.0	[0..1]	[122..1]
gi\|88945067, gi\|... - gi\|88945067\|ref\|ZP_01148287.1\| Adenosylmethionine decarboxylase [Desulfotomaculum reducens MI-1], gi...	171.0	[0..1]	[115..1]
SPEH_CALS8 - S-adenosylmethionine decarboxylase proenzyme OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43... SPEH_CALBD - S-adenosylmethionine decarboxylase proenzyme OS=Caldicellulosiruptor bescii (strain ATCC BAA-1888 / ...	170.0	[0..1]	[120..1]
SPEH_CLOTH - S-adenosylmethionine decarboxylase proenzyme OS=Clostridium thermocellum (strain ATCC 27405 / DSM 12...	170.0	[0..1]	[120..1]
SPEH_BACCN - S-adenosylmethionine decarboxylase proenzyme OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 ...	169.0	[0..1]	[122..4]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTMGRHVIS ELWGCDFDKL NDIDFIEKTF VDAALKSGAE IREVAFHKFA PQGVSGVVII  60
   61 SESHLTIHTF PEHGYASIDV YTCGHLDPTI AADYIAEMLG AQTRETIELP RGMRPIEVKK 120
  121 AQAL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.522879
Match:	1vr7A
Description:	Crystal structure of S-adenosylmethionine decarboxylase proenzyme (TM0655) from THERMOTOGA MARITIMA at 1.2 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits