YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126166541, gi...
Organism:	Pseudomonas aeruginosa C3719
Length:	169 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126166541, gi....

Description	E-value	Query Range	Subject Range
ALLA_PSEA7 - Ureidoglycolate lyase OS=Pseudomonas aeruginosa (strain PA7) GN=allA PE=3 SV=1	4.0E-71	[1..169]	[1..169]
gi\|107100945 - gi\|107100945\|ref\|ZP_01364863.1\| hypothetical protein PaerPA_01001975 [Pseudomonas aeruginosa PACS2]	5.0E-71	[1..169]	[1..169]
ALLA_PSEE4 - Ureidoglycolate lyase OS=Pseudomonas entomophila (strain L48) GN=allA PE=3 SV=1 gi\|95109828 - gi\|95109828\|emb\|CAK14533.1\| Ureidoglycolate hydrolase [Pseudomonas entomophila L48]	6.0E-69	[1..166]	[1..166]
ALLA_PSEPG - Ureidoglycolate lyase OS=Pseudomonas putida (strain GB-1) GN=allA PE=3 SV=1 tr\|I7BYQ8\|I7BYQ8... - Ureidoglycolate hydrolase OS=Pseudomonas putida (strain DOT-T1E) GN=allA PE=3 SV=1 tr\|E4RC83\|E4RC83... - Ureidoglycolate hydrolase OS=Pseudomonas putida (strain BIRD-1) GN=allA PE=3 SV=1 ALLA_PSEP1 - Ureidoglycolate lyase OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=allA PE=3 SV=1 ALLA_PSEPK - Ureidoglycolate lyase OS=Pseudomonas putida (strain KT2440) GN=allA PE=1 SV=1	9.0E-69	[1..166]	[1..166]
ALLA_PSEPF - Ureidoglycolate lyase OS=Pseudomonas fluorescens (strain Pf0-1) GN=allA PE=3 SV=1	1.0E-68	[1..166]	[1..166]
ALLA_PSESM - Ureidoglycolate lyase OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=allA PE=3 SV=1 gi\|213926493, gi... - gi\|213968890\|ref\|ZP_03397031.1\| ureidoglycolate hydrolase [Pseudomonas syringae pv. tomato T1], gi\|2... ALLA_PSESM - Ureidoglycolate hydrolase OS=Pseudomonas syringae pv. tomato GN=allA PE=3 SV=1	1.0E-68	[1..169]	[1..169]
ALLA_PSEU2 - Ureidoglycolate lyase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=allA PE=3 SV=1	1.0E-68	[1..169]	[1..169]
ALLA_PSE14 - Ureidoglycolate lyase OS=Pseudomonas savastanoi pv. phaseolicola (strain 1448A / Race 6) GN=allA PE=...	3.0E-68	[1..169]	[1..169]
ALLA_PSEF5 - Ureidoglycolate lyase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=allA PE=3 SV=1	1.0E-67	[1..166]	[1..166]
gi\|74019843, gi\|... - gi\|74019843\|ref\|ZP_00690455.1\| Ureidoglycolate hydrolase [Burkholderia ambifaria AMMD], gi\|72607488\|...	1.0E-65	[1..165]	[1..164]

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Predicted Domain #1

Region A:
Residues: [1-169]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLKIEPLT KEAFAPFGDV IETAGSDYFM INNGSTRRYH KLATVETAQP EDNAIISIFS  60
   61 AEKLEMPLRI RMLERHPLGS QAFIPLLGNP FLVVVAPLGD VPVPGLVRAF LTNGRQGVNY 120
  121 HRGVWHHPVL TIEKRDDFLV VDRSGSGNNC DEHFFTEDEQ LLLDPQSNQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	70.522879
Match:	2bdrA
Description:	Crystal Structure of the Putative Ureidoglycolate hydrolase PP4288 from Pseudomonas putida, Northeast Structural Genomics Target PpR49
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
ureidoglycolate hydrolase activity	2.68390870020187	bayes_pls_golite062009
catalytic activity	0.77242843392921	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: