YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254245144, gi...
Organism:	Pseudomonas aeruginosa 2192
Length:	312 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254245144, gi....

Description	E-value	Query Range	Subject Range
Y2261_SHESA - UPF0176 protein Shewana3_2261 OS=Shewanella sp. (strain ANA-3) GN=Shewana3_2261 PE=3 SV=1	7.0E-95	[1..303]	[1..303]
Y1760_SHESM - UPF0176 protein Shewmr4_1760 OS=Shewanella sp. (strain MR-4) GN=Shewmr4_1760 PE=3 SV=1	1.0E-94	[1..303]	[1..303]
Y2130_SHEPC - UPF0176 protein Sputcn32_2130 OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=Sputcn32_2... Y1881_SHESW - UPF0176 protein Sputw3181_1881 OS=Shewanella sp. (strain W3-18-1) GN=Sputw3181_1881 PE=3 SV=1	3.0E-94	[1..303]	[1..303]
Y1838_SHESR - UPF0176 protein Shewmr7_1838 OS=Shewanella sp. (strain MR-7) GN=Shewmr7_1838 PE=3 SV=1	8.0E-94	[1..303]	[1..303]
Y1781_SHELP - UPF0176 protein Shew_1781 OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=Shew_1781 PE=3 SV=1	1.0E-93	[1..303]	[1..303]
Y2481_SHEB9 - UPF0176 protein Sbal195_2481 OS=Shewanella baltica (strain OS195) GN=Sbal195_2481 PE=3 SV=1	1.0E-93	[1..303]	[1..303]
Y522_HAHCH - UPF0176 protein HCH_00522 OS=Hahella chejuensis (strain KCTC 2396) GN=HCH_00522 PE=3 SV=1	2.0E-93	[1..307]	[1..307]
gi\|49085392 - gi\|49085392\|gb\|AAT51274.1\| PA0858 [synthetic construct]	2.0E-93	[1..312]	[1..312]
Y2378_SHEB5 - UPF0176 protein Sbal_2378 OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=Sbal_2378 PE=3 SV=...	2.0E-93	[1..303]	[1..303]
gi\|94428786, gi\|... - gi\|94499154\|ref\|ZP_01305692.1\| predicted sulfurtransferase [Oceanobacter sp. RED65], gi\|94428786\|gb\|...	3.0E-93	[3..312]	[7..315]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIVVAALY KFVTLDDYVA LREPLLQTLL DNGVKGTLLL AEEGINGTVS GSREGIDALF  60
   61 AWLRSDPRLA DIEHKESYCD EQPFYRTKVK LKKEIVTLGV PGVDPNKQVG QYVEAKDWNA 120
  121 LISDPEVLLI DTRNDYEVAI GTFEGAVDPK TRSFREFPEY IKAHYDPARH KKVAMFCTGG 180
  181 IRCEKASSYM LGAGFEEVFH LKGGILKYLE EVPQEQSLW

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	28.69897
Match:	1e0cA
Description:	Sulfurtransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [220-312]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGDCFVFDNR VTVRHDLSEG EYDQCHACRN PVSLEDRQSE HYVPGISCPH CWDSLSEKTR  60
   61 AGARERQKQI ELARQRNQPH PLGRDPRQST LEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.366	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.357	N/A	N/A	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.329	N/A	N/A	a.7.8	GAT domain
View	Download	0.327	N/A	N/A	d.109.1	Actin depolymerizing proteins
View	Download	0.290	N/A	N/A	a.12.1	Kix domain of CBP (creb binding protein)

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits