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View Structure Prediction Details

Protein: CE39547
Organism: Caenorhabditis elegans
Length: 234 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39547.

Description E-value Query
Range
Subject
Range
CE39548 - status:Confirmed UniProt:Q2L6V1 protein_id:ABC71840.1
240.0 [0..19] [234..1]

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Predicted Domain #1
Region A:
Residues: [1-157]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNFDFTNFH SLRFFKSTMW RSLPSLVSSA VRSQNAVNTR FSSTMKQFFD DEANFGKAEL  60
   61 RPKHRPGRSW TAEELRLKSN SDLHKLWYVC LKERNMLITM KKAHTSRARN MPNPERLDRV 120
  121 HETMDRIESV VHERNDAVFR LETGESAAPR KRTITSF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.14
Match: 1p85W
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
structural constituent of ribosome 4.70571586133606 bayes_pls_golite062009
structural molecule activity 4.5930470522379 bayes_pls_golite062009

Predicted Domain #2
Region A:
Residues: [158-234]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AGFTYQKQAT EHFAPPQLGQ KEYETPYLDD DAYVMQKLWQ EKEFMKNRDR LDDEKRRAAR  60
   61 TEDMDRFKRG APRVFNR

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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