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View Structure Prediction Details

Protein: CE39564
Organism: Caenorhabditis elegans
Length: 243 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE39564.

Description E-value Query
Range
Subject
Range
gi|157769691 - gi|157769691|ref|XP_001676666.1| Hypothetical protein CBG14602 [Caenorhabditis briggsae AF16]
gi|39597996, gi|... - gi|39597996|emb|CAE68688.1| Hypothetical protein CBG14602 [Caenorhabditis briggsae], gi|187028001|em...
344.0 [0..1] [243..1]

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Predicted Domain #1
Region A:
Residues: [1-102]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSERKTTSAQ TIVIISSLIL LIVALGLQAG GVMSPSWQVV DIREFRATHH HGLWLDCTRP  60
   61 QLHLVKSQNK DDLPLHCTYK FDISATQIID ENIEDIDQNS AA

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [103-243]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GESEHHQFFG WHKFTLGFML CAIVLAALSL LCGICAPCSS GFAVLYAILV AFTAFTATCG  60
   61 DAIFFFAAHR VDSRFVQGLV GTYEQVIGMA FYLHVAGTAI SCLALIMAAI SAYSLLQNNE 120
  121 SDRHLPMREM APLHEPRFAR V

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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