YRC Public Data Repository - Protein Structure Prediction

Protein:	RS11_NATPD
Organism:	Natronomonas pharaonis DSM 2160
Length:	127 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RS11_NATPD.

Description	E-value	Query Range	Subject Range
gi\|88915995, gi\|... - gi\|88937250\|ref\|ZP_01142827.1\| ribosomal protein S11 [Geobacter uraniumreducens Rf4], gi\|88915995\|gb...	171.0	[0..4]	[126..17]
RS11_GEOMG - 30S ribosomal protein S11 OS=Geobacter metallireducens (strain GS-15 / ATCC 53774 / DSM 7210) GN=rps...	170.0	[0..4]	[126..17]
RS11_HALSA - 30S ribosomal protein S11P OS=Halobacterium salinarium GN=rps11p PE=3 SV=2 RS11_HALSA - 30S ribosomal protein S11 OS=Halobacterium salinarum (strain ATCC 700922 / JCM 11081 / NRC-1) GN=rps... gi\|169235944, gi... - gi\|169235944\|ref\|YP_001689144.1\| ribosomal protein S11 [Halobacterium salinarum R1], gi\|167727010\|em...	169.0	[0..1]	[127..1]
gi\|222056681, gi... - gi\|222056681\|ref\|YP_002539043.1\| ribosomal protein S11 [Geobacter sp. FRC-32], gi\|221565970\|gb\|ACM21...	169.0	[0..4]	[126..17]
RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens GN=rpsK PE=3 SV=1 RS11_GEOSL - 30S ribosomal protein S11 OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) GN=rpsK ...	168.0	[0..4]	[126..17]
RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana (strain Toulouse) GN=rpsK PE=3 SV=1 RS11_BARQU - 30S ribosomal protein S11 OS=Bartonella quintana GN=rpsK PE=3 SV=1	165.0	[0..2]	[126..13]
RS11_MAGSA - 30S ribosomal protein S11 OS=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) GN=rpsK PE=3 S...	165.0	[0..4]	[126..17]
RS11_SYNAS - 30S ribosomal protein S11 OS=Syntrophus aciditrophicus (strain SB) GN=rpsK PE=3 SV=1	165.0	[0..4]	[126..16]
RS11_BARHE - 30S ribosomal protein S11 OS=Bartonella henselae GN=rpsK PE=3 SV=1 RS11_BARHE - 30S ribosomal protein S11 OS=Bartonella henselae (strain ATCC 49882 / DSM 28221 / Houston 1) GN=rpsK...	165.0	[0..2]	[126..13]
RS11_RHIL3 - 30S ribosomal protein S11 OS=Rhizobium leguminosarum bv. viciae (strain 3841) GN=rpsK PE=3 SV=1 RS11_AGRRK - 30S ribosomal protein S11 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rpsK PE=3 SV=1 gi\|218679852 - gi\|218679852\|ref\|ZP_03527749.1\| 30S ribosomal protein S11 [Rhizobium etli CIAT 894] RS11_RHIEC - 30S ribosomal protein S11 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rpsK PE=3 SV=1 gi\|218674112 - gi\|218674112\|ref\|ZP_03523781.1\| 30S ribosomal protein S11 [Rhizobium etli GR56] gi\|218516293 - gi\|218516293\|ref\|ZP_03513133.1\| 30S ribosomal protein S11 [Rhizobium etli 8C-3] gi\|218508352 - gi\|218508352\|ref\|ZP_03506230.1\| 30S ribosomal protein S11 [Rhizobium etli Brasil 5] RS11_RHILW - 30S ribosomal protein S11 OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=rpsK PE=3 SV=1 RS11_RHIE6 - 30S ribosomal protein S11 OS=Rhizobium etli (strain CIAT 652) GN=rpsK PE=3 SV=1 gi\|167358169, gi... - gi\|241204188\|ref\|YP_002975284.1\| ribosomal protein S11 [Rhizobium leguminosarum bv. trifolii WSM1325...	165.0	[0..3]	[126..14]

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Predicted Domain #1

Region A:
Residues: [1-127]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADDTTWGIA NVYASFNNTI ITVTDMTGAE TIVKSSGGTV VKQNRDEASP YAAMQMAEVV  60
   61 AEDVKDAGID GVHVRVRGPG GNQQQNPGPG AQATIRALAR AGLEIGRIED VTPIPHDGTR 120
  121 GPKNAGF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.39794
Match:	1s1hK
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1H, Contains 40S subunit. The 60S Ribosomal Subunit Is In File 1S1I.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits