YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|76800681, gi\|...
Organism:	Natronomonas pharaonis DSM 2160
Length:	270 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|76800681, gi|....

Description	E-value	Query Range	Subject Range
gi\|222526984, gi... - gi\|222526984\|ref\|YP_002571455.1\| UBA/THIF-type NAD/FAD binding protein [Chloroflexus sp. Y-400-fl], ... gi\|53796678 - ref\|ZP_00020762.2\| COG0476: Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine bi... gi\|163849021, gi... - gi\|76258733\|ref\|ZP_00766387.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Chlorofl...	339.0	[0..1]	[270..1]
gi\|83756702, gi\|... - gi\|83815308\|ref\|YP_446148.1\| MoeZ/MoeB domain-contain protein [Salinibacter ruber DSM 13855], gi\|837...	337.0	[0..3]	[270..12]
gi\|106891733, gi... - gi\|148654884\|ref\|YP_001275089.1\| UBA/THIF-type NAD/FAD binding protein [Roseiflexus sp. RS-1], gi\|14...	335.0	[0..1]	[270..1]
gi\|117928984, gi... - gi\|88931318\|ref\|ZP_01137012.1\| Rhodanese-like [Acidothermus cellulolyticus 11B], gi\|88912597\|gb\|EAR3...	333.0	[0..4]	[270..11]
gi\|35213984, gi\|... - gi\|37522981\|ref\|NP_926358.1\| hypothetical protein gll3412 [Gloeobacter violaceus PCC 7421], gi\|35213...	330.0	[0..2]	[270..7]
gi\|91203467 - gi\|91203467\|emb\|CAJ71120.1\| strongly similar to molybdopterin synthesis protein MoeB and thiamin bio...	329.0	[0..5]	[270..4]
gi\|45545541, gi\|... - gi\|68563155\|ref\|ZP_00602357.1\| UBA/THIF-type NAD/FAD binding fold:Rhodanese-like:MoeZ/MoeB [Rubrobac...	328.0	[0..3]	[270..12]
gi\|114777472, gi... - gi\|114777472\|ref\|ZP_01452469.1\| molybdopterin biosynthesis protein MoeB [Mariprofundus ferrooxydans ...	327.0	[0..5]	[270..3]
gi\|29606732, gi\|... - gi\|29829624\|ref\|NP_824258.1\| molybdopterin biosynthesis-like protein MoeZ [Streptomyces avermitilis ...	323.0	[0..5]	[270..12]
gi\|9714466, gi\|2... - gi\|9714466\|emb\|CAC01308.1\| putative sulfurylase [Streptomyces coelicolor A3(2)], gi\|21223547\|ref\|NP_...	322.0	[0..5]	[270..12]

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Predicted Domain #1

Region A:
Residues: [1-270]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTDLSLSADQ LDRYSRHIIM DDVGPEGQKR LLDANVLCIG AGGLGSPIIQ YLAAAGVGTL  60
   61 GIADDDVVER SNLQRQVIHG DDDVGQPKVE SAAAFVEALN PDVTVEPHET RVTADNIDGL 120
  121 LAEYDVVVDG SDNFATRYLV NDACTLAGVP FAHGAILRFE GQITTFEATP EGPCYRCLFP 180
  181 EAPEPGTVPD CATAGVLGVL PGTVGCIQAT EAVKLVLGHG ETLDGRMLFY DAADMSFEEI 240
  241 PVEKRPDCPV CGDGGVESVH DVDYESTCAI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	75.0
Match:	1jw9B
Description:	Molybdenum cofactor biosynthesis protein MoeB
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits