YRC Public Data Repository - Protein Structure Prediction

Protein:	RL20_SHEB5
Organism:	Shewanella baltica OS155
Length:	118 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL20_SHEB5.

Description	E-value	Query Range	Subject Range
sp\|A0L4J9\|RL20_MAGMM - 50S ribosomal protein L20 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplT... RL20_MAGMM - 50S ribosomal protein L20 OS=Magnetococcus marinus (strain ATCC BAA-1437 / JCM 17883 / MC-1) GN=rplT...	163.0	[0..1]	[117..1]
gi\|229331724, gi... - gi\|229497246\|ref\|ZP_04390947.1\| ribosomal protein L20 [Geobacillus sp. Y412MC52], gi\|229331724\|gb\|EE... RL20_GEOKA - 50S ribosomal protein L20 OS=Geobacillus kaustophilus (strain HTA426) GN=rplT PE=3 SV=1 gi\|220707878, gi... - gi\|221088116\|ref\|ZP_03557649.1\| ribosomal protein L20 [Geobacillus sp. Y412MC61], gi\|220707878\|gb\|EE... RL20_GEOKA - 50S ribosomal protein L20 OS=Geobacillus kaustophilus GN=rplT PE=3 SV=1	163.0	[0..1]	[118..1]
RL20_BACLD - 50S ribosomal protein L20 OS=Bacillus licheniformis (strain ATCC 14580 / DSM 13 / JCM 2505 / NBRC 12...	163.0	[0..1]	[118..1]
gi\|221320070 - gi\|221320070\|ref\|ZP_03601364.1\| 50S ribosomal protein L20 [Bacillus subtilis subsp. subtilis str. JH... gi\|221315152 - gi\|221315152\|ref\|ZP_03596957.1\| 50S ribosomal protein L20 [Bacillus subtilis subsp. subtilis str. NC... RL20_BACSU - 50S ribosomal protein L20 OS=Bacillus subtilis (strain 168) GN=rplT PE=1 SV=1 gi\|221324352 - gi\|221324352\|ref\|ZP_03605646.1\| 50S ribosomal protein L20 [Bacillus subtilis subsp. subtilis str. SM... RL20_BACSU - 50S ribosomal protein L20 OS=Bacillus subtilis GN=rplT PE=3 SV=1	162.0	[0..1]	[118..1]
RL20_CHESB - 50S ribosomal protein L20 OS=Chelativorans sp. (strain BNC1) GN=rplT PE=3 SV=1	162.0	[0..1]	[117..1]
RL20_BACWK - 50S ribosomal protein L20 OS=Bacillus weihenstephanensis (strain KBAB4) GN=rplT PE=3 SV=1 gi\|229032218, gi... - gi\|229032218\|ref\|ZP_04188191.1\| 50S ribosomal protein L20 [Bacillus cereus AH1271], gi\|228728998\|gb\|... gi\|228747445, gi... - gi\|229013776\|ref\|ZP_04170904.1\| 50S ribosomal protein L20 [Bacillus mycoides DSM 2048], gi\|228747445... gi\|229135408, gi... - gi\|229135408\|ref\|ZP_04264196.1\| 50S ribosomal protein L20 [Bacillus cereus BDRD-ST196], gi\|228648051... gi\|229062257, gi... - gi\|229062257\|ref\|ZP_04199578.1\| 50S ribosomal protein L20 [Bacillus cereus AH603], gi\|228716985\|gb\|E... gi\|228608114, gi... - gi\|229175282\|ref\|ZP_04302797.1\| 50S ribosomal protein L20 [Bacillus cereus MM3], gi\|228608114\|gb\|EEK... gi\|229169300, gi... - gi\|229169300\|ref\|ZP_04297010.1\| 50S ribosomal protein L20 [Bacillus cereus AH621], gi\|228614063\|gb\|E...	162.0	[0..1]	[118..1]
RL20_SHEFN - 50S ribosomal protein L20 OS=Shewanella frigidimarina (strain NCIMB 400) GN=rplT PE=3 SV=1	161.0	[0..1]	[117..1]
RL20_OCEIH - 50S ribosomal protein L20 OS=Oceanobacillus iheyensis GN=rplT PE=3 SV=1 RL20_OCEIH - 50S ribosomal protein L20 OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC 3954 / HT...	161.0	[0..1]	[117..1]
RL20_BACSK - 50S ribosomal protein L20 OS=Bacillus clausii (strain KSM-K16) GN=rplT PE=3 SV=1	161.0	[0..1]	[118..1]
RL20_GEOSE - 50S ribosomal protein L20 OS=Geobacillus stearothermophilus GN=rplT PE=3 SV=1	160.0	[0..1]	[118..1]

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Predicted Domain #1

Region A:
Residues: [1-118]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRVKRGVTA RARHKKVLKL AKGYYGARSR TYRVAVQAVT KAGQYAYRDR RQKKRQFRQL  60
   61 WIARINAAAR QNGLSYSRFI NGLKKASIEI DRKILADIAV FDKVVFATLV EKAKEALN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.09691
Match:	1vs6Q
Description:	No description for 1vs6Q was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.97474791978241	bayes_pls_golite062009
structural molecule activity	9.40020164128852	bayes_pls_golite062009
binding	1.3135072239079	bayes_pls_golite062009
nucleic acid binding	0.517171097292651	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: