YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|61680787
Organism:	Homo sapiens
Length:	100 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|61680787.

Description	E-value	Query Range	Subject Range
gi\|5523975 - gi\|5523975\|gb\|AAD44040.1\|AF104023_1 polyprotein [Bovine viral diarrhea virus genotype 2]	127.0	[0..13]	[97..167]
gi\|50756309 - gi\|50756309\|ref\|XP_415105.1\| PREDICTED: similar to polyubiquitin with 3 Ub domains [Gallus gallus]	126.0	[0..1]	[99..151]
gi\|113578271, gi... - gi\|115462241\|ref\|NP_001054720.1\| Os05g0160200 [Oryza sativa (japonica cultivar-group)], gi\|113578271...	125.0	[0..16]	[98..16]
gi\|567767 - gi\|567767\|gb\|AAA53067.1\| p125 protein	125.0	[0..21]	[99..345]
gi\|73970166 - gi\|73970166\|ref\|XP_531829.2\| PREDICTED: similar to ubiquitin and ribosomal protein S27a precursor [C...	125.0	[0..18]	[98..68]
gi\|73586974 - gi\|73586974\|gb\|AAI02492.1\| RPS27A protein [Bos taurus]	125.0	[0..18]	[98..21]
gi\|53987035 - gi\|53987035\|gb\|AAV27297.1\| poly-histidine-tagged ubiquitin [Cloning vector pHUE]	125.0	[0..1]	[99..1]
gi\|114577583 - gi\|114577583\|ref\|XP_001147989.1\| PREDICTED: similar to RPS27A protein [Pan troglodytes]	124.0	[0..18]	[98..75]

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Predicted Domain #1

Region A:
Residues: [1-100]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSSHHHHHH SSGLVPRGSP HLIKVTVKTP KDKEDFSVTD TCTIQQLKEE ISQRFKAHPD  60
   61 QLVLIFAGKI LKDPDSLAQC GVRDGLTVHL VIKRQHRAMG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	20.69897
Match:	1yqbA
Description:	Human Ubiquilin 3
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.0934358341245259	bayes_pls_golite062009
protein binding	0.03789551947602	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: