YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|88192402, gi\|...
Organism:	Thermus thermophilus
Length:	82 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|88192402, gi|....

Description	E-value	Query Range	Subject Range
gi\|86163693, gi\|... - gi\|87120855\|ref\|ZP_01076747.1\| RpmG protein [Marinomonas sp. MED121], gi\|86163693\|gb\|EAQ64966.1\| Rpm...	84.0	[0..28]	[82..1]
RL33_ACIC1 - 50S ribosomal protein L33 OS=Acidothermus cellulolyticus (strain ATCC 43068 / 11B) GN=rpmG PE=3 SV=1	81.0	[0..28]	[81..2]
RL33_VIBPA - 50S ribosomal protein L33 OS=Vibrio parahaemolyticus GN=rpmG PE=3 SV=1 gi\|116185450, gi... - gi\|75856098\|ref\|ZP_00763733.1\| COG0267: Ribosomal protein L33 [Vibrio sp. Ex25], gi\|116185450\|ref\|ZP... gi\|91229867, gi\|... - gi\|91229867\|ref\|ZP_01262953.1\| 50S ribosomal protein L33 [Vibrio alginolyticus 12G01], gi\|91187357\|g... RL33_VIBCB - 50S ribosomal protein L33 OS=Vibrio campbellii (strain ATCC BAA-1116 / BB120) GN=rpmG PE=3 SV=1 gi\|149746509, gi... - gi\|153844856\|ref\|ZP_01993705.1\| ribosomal protein L33 [Vibrio parahaemolyticus AQ3810], gi\|153839970... RL33_VIBPA - 50S ribosomal protein L33 OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=rpmG PE... gi\|159172908, gi... - gi\|163803271\|ref\|ZP_02197150.1\| 50S ribosomal protein L33 [Vibrio campbellii AND4], gi\|159172908\|gb\|...	81.0	[0..28]	[82..1]
RL33_FRAAA - 50S ribosomal protein L33 OS=Frankia alni (strain ACN14a) GN=rpmG PE=3 SV=1 RL33_FRASC - 50S ribosomal protein L33 OS=Frankia sp. (strain CcI3) GN=rpmG PE=3 SV=1	80.0	[0..28]	[81..1]
gi\|254401451, gi... - gi\|254401451\|ref\|ZP_05016406.1\| 50S ribosomal protein L33 [Streptomyces sviceus ATCC 29083], gi\|1977... RL332_STRAW, R33... - 50S ribosomal protein L33 2 OS=Streptomyces avermitilis GN=rpmG2 PE=3 SV=1, (P66234) 50S ribosomal p... RL332_STRAW - 50S ribosomal protein L33 2 OS=Streptomyces avermitilis (strain ATCC 31267 / DSM 46492 / JCM 5070 / ... gi\|239980087 - gi\|239980087\|ref\|ZP_04702611.1\| 50S ribosomal protein L33 [Streptomyces albus J1074] RL332_STRCO, R33... - 50S ribosomal protein L33 2 OS=Streptomyces coelicolor GN=rpmG2 PE=3 SV=1, (P66233) 50S ribosomal pr... RL332_STRCO - 50S ribosomal protein L33 2 OS=Streptomyces coelicolor (strain ATCC BAA-471 / A3(2) / M145) GN=rpmG2... gi\|239929545 - gi\|239929545\|ref\|ZP_04686498.1\| 50S ribosomal protein L33 [Streptomyces ghanaensis ATCC 14672]	80.0	[0..28]	[81..1]
RL33_CALS8 - 50S ribosomal protein L33 OS=Caldicellulosiruptor saccharolyticus (strain ATCC 43494 / DSM 8903 / Tp...	80.0	[0..28]	[81..1]
gi\|27315480, gi\|... - gi\|27467935\|ref\|NP_764572.1\| 50S ribosomal protein L33 [Staphylococcus epidermidis ATCC 12228], gi\|2...	80.0	[0..32]	[81..3]
RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum GN=rpmG PE=3 SV=1 RL33_BIFLO - 50S ribosomal protein L33 OS=Bifidobacterium longum (strain NCC 2705) GN=rpmG PE=3 SV=1 gi\|23336434 - gi\|23336434\|ref\|ZP_00121652.1\| COG0267: Ribosomal protein L33 [Bifidobacterium longum DJO10A] gi\|227213107, gi... - gi\|227546450\|ref\|ZP_03976499.1\| ribosomal protein L33 [Bifidobacterium longum subsp. infantis ATCC 5... gi\|223466532, gi... - gi\|223466532\|ref\|ZP_03618068.1\| hypothetical protein BIFBRE_00234 [Bifidobacterium breve DSM 20213],...	80.0	[0..28]	[81..3]
gi\|50956440 - gi\|50956440\|gb\|AAT90748.1\| RpmG [Bifidobacterium animalis] gi\|183218810, gi... - gi\|183601925\|ref\|ZP_02963294.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis HN... gi\|50956440 - gi\|50956440\|gb\|AAT90748.1\| RpmG [Bifidobacterium animalis] gi\|240248807, gi... - gi\|241190415\|ref\|YP_002967809.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis B... gi\|241195821, gi... - gi\|241195821\|ref\|YP_002969376.1\| 50S ribosomal protein L33 [Bifidobacterium animalis subsp. lactis D...	80.0	[0..28]	[81..1]
RL332_STAAT - 50S ribosomal protein L33 2 OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=rpmG2 PE=3 SV=1 gi\|87128342\|gb\|A... - 50S ribosomal protein L33 [Staphylococcus aureus subsp. aureus USA300] RL331_STAA3 - 50S ribosomal protein L33 1 OS=Staphylococcus aureus (strain USA300) GN=rpmG1 PE=3 SV=1 RL332_STAAB - 50S ribosomal protein L33 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=rpmG2 PE=3 SV=...	80.0	[0..32]	[81..3]

Back

Predicted Domain #1

Region A:
Residues: [1-82]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFLLRQALGA TFPVPGDQRE GCAKESIMAK DGPRIIVKME SSAGTGFYYT TTKNRRNTQA  60
   61 KLELKKYDPV AKKHVVFREK KV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.39794
Match:	1nkw1
Description:	50S subunit
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits