YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|75814848, gi\|...
Organism:	Vibrio cholerae V52
Length:	149 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|75814848, gi|....

Description	E-value	Query Range	Subject Range
gi\|15642270, gi\|... - gi\|9656834\|gb\|AAF95416.1\| conserved hypothetical protein [Vibrio cholerae O1 biovar El Tor str. N169... gi\|229355160, gi... - gi\|229507655\|ref\|ZP_04397160.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229512150, gi... - gi\|229512150\|ref\|ZP_04401629.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|227010284, gi... - gi\|227082396\|ref\|YP_002810947.1\| Transcriptional repressor nrdR [Vibrio cholerae M66-2], gi\|22701028... gi\|229522217, gi... - gi\|229522217\|ref\|ZP_04411634.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229337855, gi... - gi\|229524274\|ref\|ZP_04413679.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229349094, gi... - gi\|229513913\|ref\|ZP_04403375.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229519285, gi... - gi\|229519285\|ref\|ZP_04408728.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|11279353 - gi\|11279353\|pir\|\|G82098 conserved hypothetical protein VC2272 [imported] - Vibrio cholerae (strain N... gi\|229528727, gi... - gi\|229528727\|ref\|ZP_04418117.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio chol... gi\|229369814, gi... - gi\|229607159\|ref\|YP_002877807.1\| ribonucleotide reductase transcriptional regulator NrdR [Vibrio cho...	212.0	[0..1]	[149..8]
gi\|37197786, gi\|... - gi\|37679044\|ref\|NP_933653.1\| hypothetical protein VV0860 [Vibrio vulnificus YJ016], gi\|37197786\|dbj\|...	210.0	[0..1]	[149..13]
NRDR_VIBTL - Transcriptional repressor NrdR OS=Vibrio tasmaniensis (strain LGP32) GN=nrdR PE=3 SV=1 gi\|84375023, gi\|... - gi\|84394364\|ref\|ZP_00993085.1\| hypothetical protein V12B01_22231 [Vibrio splendidus 12B01], gi\|84375... gi\|86147438, gi\|... - gi\|86147438\|ref\|ZP_01065750.1\| hypothetical protein MED222_21329 [Vibrio sp. MED222], gi\|85834731\|gb...	208.0	[0..1]	[149..1]
gi\|26522769 - gi\|26522769\|dbj\|BAC44856.1\| RibX [Vibrio fischeri] NRDR_VIBFM - Transcriptional repressor NrdR OS=Vibrio fischeri (strain MJ11) GN=nrdR PE=3 SV=1 NRDR_VIBF1 - Transcriptional repressor NrdR OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=nrdR PE=3 SV=1	207.0	[0..1]	[147..1]
Y678_VIBPA, NRDR... - (Q87RU8) UPF0168 protein VP0678, Transcriptional repressor NrdR OS=Vibrio parahaemolyticus GN=nrdR P... NRDR_VIBPA - Transcriptional repressor NrdR OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=nr...	207.0	[0..1]	[149..1]
gi\|78362274, gi\|... - gi\|78365738\|ref\|ZP_00836023.1\| Protein of unknown function DUF193 [Shewanella sp. PV-4], gi\|78362274...	207.0	[0..1]	[149..33]
gi\|91190013, gi\|... - gi\|91225070\|ref\|ZP_01260292.1\| hypothetical protein V12G01_12620 [Vibrio alginolyticus 12G01], gi\|91...	206.0	[0..1]	[149..1]
NRDR_VIBVU - Transcriptional repressor NrdR OS=Vibrio vulnificus (strain CMCP6) GN=nrdR PE=3 SV=1 NRDR_VIBVU, Y324... - (Q8DF95) UPF0168 protein VV10324, Transcriptional repressor NrdR OS=Vibrio vulnificus GN=nrdR PE=3 S...	206.0	[0..1]	[149..1]
gi\|90579821, gi\|... - gi\|90579821\|ref\|ZP_01235629.1\| hypothetical protein VAS14_16586 [Vibrio angustum S14], gi\|90438706\|g...	206.0	[0..1]	[147..1]

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Predicted Domain #1

Region A:
Residues: [1-149]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MHCPFCSEND TKVIDSRLVA DGHQVRRRRQ CLACNERFTT FETAELVMPR VIKSNGNREP  60
   61 FDEEKMIGGL QRALEKRPVS ADAIELAIST IKSKLRATGE REVPSKLIGN LVMEQLKVLD 120
  121 KVAYIRFASV YRSFEDVREF GEEIAKLQD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	4.30103
Match:	6r1rA
Description:	R1 subunit of ribonucleotide reductase, N-terminal domain; R1 subunit of ribonucleotide reductase, C-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits