YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|83283973
Organism: Solanum tuberosum
Length: 148 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|83283973.

Description E-value Query
Range
Subject
Range
UBC28_ARATH - Ubiquitin-conjugating enzyme E2 28 OS=Arabidopsis thaliana GN=UBC28 PE=2 SV=1
214.0 [0..1] [148..1]
gi|456568 - gi|456568|gb|AAA64427.1| ubiquitin conjugating enzyme
213.0 [0..1] [148..1]
gi|125550147, gi... - gi|90399233|emb|CAH68307.1| B0811B10.8 [Oryza sativa (indica cultivar-group)], gi|125550147|gb|EAY95...
gi|195617724, gi... - gi|238012450|gb|ACR37260.1| unknown [Zea mays], gi|226492411|ref|NP_001148222.1| ubiquitin-conjugati...
gi|241939908, gi... - gi|242077578|ref|XP_002448725.1| hypothetical protein SORBIDRAFT_06g032120 [Sorghum bicolor], gi|241...
gi|32488376, gi|... - gi|50929483|ref|XP_474269.1| OSJNBa0043A12.6 [Oryza sativa (japonica cultivar-group)], gi|32488376|e...
213.0 [0..1] [148..1]
gi|115187616 - gi|115187616|gb|ABI84263.1| ubiquitin carrier-like protein [Arachis hypogaea]
213.0 [0..1] [148..1]
gi|357166623|ref... - PREDICTED: ubiquitin-conjugating enzyme E2 28-like [Brachypodium distachyon]
gi|52548244 - gi|52548244|gb|AAU82109.1| ubiquitin-conjugating enzyme [Triticum aestivum]
213.0 [0..1] [148..1]
gi|28569271 - gi|28569271|gb|AAL99225.1| ubiquitin-conjugating enzyme E2 [Gossypium raimondii]
gi|28569269 - gi|28569269|gb|AAL99224.1| ubiquitin-conjugating enzyme E2 [Gossypium thurberi]
212.0 [0..1] [148..1]
gi|37590333, gi|... - gi|41152425|ref|NP_955958.1| ubiquitin-conjugating enzyme E2D 1 (UBC4/5 homolog, yeast) [Danio rerio...
211.0 [0..1] [147..1]
gi|109066782 - gi|109066782|ref|XP_001096263.1| PREDICTED: similar to ubiquitin-conjugating enzyme E2D 4 (putative)...
gi|114613001, gi... - gi|114613001|ref|XP_519070.2| PREDICTED: ubiquitin-conjugating enzyme E2D 4 (putative) isoform 4 [Pa...
UBE2D4 - ubiquitin-conjugating enzyme E2D 4 (putative)
211.0 [0..1] [147..1]
gi|22597164 - gi|22597164|gb|AAN03469.1| ubiquitin-conjugation enzyme [Glycine max]
211.0 [0..1] [148..1]

Back

Predicted Domain #1
Region A:
Residues: [1-148]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKRILKEL KDLQKDPPTS CSAGPVAEDM FHWQATIMGP TDSPYAGGVF LVSIHFPPDY  60
   61 PFKPPKVAFR TKVFHPNINS NGSICLDILK EQWSPALTIS KVLLSICSLL TDPNPDDPLV 120
  121 PEIAHMYKTD RAKYETTARS WTQKYAMG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 55.154902
Match: 1z2uA
Description: The 1.1A crystallographic structure of ubiquitin-conjugating enzyme (ubc-2) from Caenorhabditis elegans: functional and evolutionary significance
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle