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View Structure Prediction Details

Protein: gi|113645350, gi...
Organism: Oryza sativa Japonica Group
Length: 521 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|113645350, gi....

Description E-value Query
Range
Subject
Range
FB252_ARATH - F-box protein At5g06550 OS=Arabidopsis thaliana GN=At5g06550 PE=2 SV=1
231.0 [0..75] [521..57]

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Predicted Domain #1
Region A:
Residues: [1-81]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSAFHSLLL PAIRNPKPSR RRGRGRGGSK RPKKTTKSKN RLADAAAGDA TAFHLKTSAR  60
   61 AGPGGAGSGR RGDGGCLVQP L

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [82-440]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GNLLLLGGGG NLRDAGLGAL RPLPDDVLLD VLGLLAARDL ARLSAASRAL YVVASHDPLW  60
   61 RALVLDELGG DFAFSGSWRA TYIAAASGGR AHLPPRGLEI RGFYSDYLFQ SWLCANMEMR 120
  121 PEWLHRDTID RRRGMSVEQF VSEFEEPNRP VLLEGCLESW PALQKWTREH LLKVSAGKEF 180
  181 AVGPVSMTLD RYLQYADNVQ EERPLYLFDA KFTEKVPEMG RDYEVPAYFR EDLFGVLGEE 240
  241 RPDHRWVIIG PAGSGSSFHV DPNSTSAWNA VIKGAKKWVM FPPEVVPPGV HPSADGAEVT 300
  301 SPVSIMEWFM NFYGACKTWE KRPVECICRA GEVVFVPNGW WHLVINLEES IAITQNYVS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.69897
Match: 2ovpB
Description: No description for 2ovpB was found.

Predicted Domain #3
Region A:
Residues: [441-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRNLLNVLDF LKRPNASELV SGTTDRVNLH DKFRNAIDMT YPGMIKQLEL EAQQKAAARK  60
   61 KKVSFWESAV DANTGGFKFS F

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 1vrbA
Description: Crystal structure of Putative asparaginyl hydroxylase (2636534) from Bacillus subtilis at 2.60 A resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle