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View Structure Prediction Details

Protein: gi|222615380, gi...
Organism: Oryza sativa Japonica Group
Length: 344 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|222615380, gi....

Description E-value Query
Range
Subject
Range
gi|115486956, gi... - gi|115486956|ref|NP_001065965.1| Os12g0110400 [Oryza sativa (japonica cultivar-group)], gi|113648472...
529.0 [0..23] [344..1]

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Predicted Domain #1
Region A:
Residues: [1-165]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAATVSLSLV VSASGFPYPF PSPLSKTLAN PSSSTSLLLA ASLSRGATPL PLLRRDVSAA  60
   61 YGDDDMDDDF GDFDLDDGDG VGDDEDLDNE QDYDVDYDRL LAPVKAPPRP LSGEGDEEEG 120
  121 DIAMVAAQSF VSTQDSASDT VVDYSVNEDE FHKIRLLHCD FFIRK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [166-344]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPDPDDDVFD FREMYVTPPD TDIYSIPRVL APMPQKYVRC MKKNFGRYHV SEPPVEHLRD  60
   61 PLYKTEREIM KVFLTKHYRN RRCNDPDFFL DFEEIYVIDS KARSITRAKV VVSVPEGKKR 120
  121 DRRNDLLLIR DGGESFRIID KTKRDDATTV IQREEWAKSR QDVEKHFRKL RDFDYSNWF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle