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View Structure Prediction Details

Protein: gi|77556819, gi|...
Organism: Oryza sativa Japonica Group
Length: 694 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|77556819, gi|....

Description E-value Query
Range
Subject
Range
gi|55276721 - gi|55276721|gb|AAV49993.1| hypothetical protien [Hordeum vulgare subsp. vulgare]
581.0 [0..27] [694..80]

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Predicted Domain #1
Region A:
Residues: [1-90]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRRRGLLLV FVVVCFGGGG WLLPASRAMP LCTDSRPPVA LNKTLAFCAY ARGSSSCCDA  60
   61 AADATLQKQF DAFNVSDASC AALLKPILCA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [91-200]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KCNPYSAELF NAGPNIRTIP FLCNSTSSSS AQSKDSTQDY CKLVWETCKD VTISNSPFQP  60
   61 PLQGGAPLPT SSSKLTDDWQ SEADFCKSFG GAPNDQSVCF SGNSVSFNTT 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [201-694]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPSPSLKGIC LERIGNGSYL NMAPHPDGSN RIFLGSQPGK IWLATVPDQG SGGILQFDET  60
   61 SPFADLTDQV HFDSQFGLMG MAFHPNFATN GRFFASYNCD RTKSPSCSGR CSCNSDVGCD 120
  121 PSKVGTDNGA QPCQYQVVVS EYSAKGSSAN ISEVTSADPS EVTRIFTMGL PYTSQHGGQI 180
  181 LFGPTDGYLY LMMGDGGGKG DPFNFSQNKK SLLGKIMRLD VDNPPRQSEI ANQSLWGNYS 240
  241 IPKDNPYTDD SDLEPEVWAL GLRNPWRCSF DSARPSYFYC ADVGQDQYEE VDLISKGGNY 300
  301 GWRAYEGPLV FNPPSAPGGN TSLNSINAIP PIMGYSHSDV NKKIGSASII GGNVYRGSTD 360
  361 PCLVGRYLYA DLYASAMWTG TEAPESSGNY SSSLISFSCS KSSPIACDTA AGSPLPSLGY 420
  421 IYSFGEDNNK DTYVLSSKGV YRVVRPSLCG YTCPTEKPAT NTGTTTPSSA ASVTGKQMMG 480
  481 ALLLSVLMFW VLVR

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 71.30103
Match: 2g8sA
Description: No description for 2g8sA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle