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View Structure Prediction Details

Protein: gi|77553658, gi|...
Organism: Oryza sativa Japonica Group
Length: 536 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|77553658, gi|....

Description E-value Query
Range
Subject
Range
gi|113644441, gi... - gi|222615514|gb|EEE51646.1| hypothetical protein OsJ_32953 [Oryza sativa Japonica Group], gi|2157041...
539.0 [0..1] [536..1]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKKNYYKE KLMRRKEEKK EEPETPRYRD RAKECREDQN LDYEPTELGS FHAVAPPGAD  60
   61 LRLADVHKIS IEKSKYLGGD LEHTHLVKGL DYALLHKVRS EIEKKPDAED GKDTQTRSTK 120
  121 EDQAVSFRTA TAKEDGLTND IPTTLHRSKA DCAVPEEMVT VSVDGSVLDR IAKIMSYLRL 180
  181 GSSGKVLKKK KKERDTKGNN SLASGDYDEV ARPGQTGSSL KHQFQKDMPP 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 61.552842
Match: PF07808.4
Description: No description for PF07808.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [231-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPPPRNNNLS KNEEQSIPVA RADEDDIFVG DGVDYSVPNK EMSHSPVSED MDESPHNHQK  60
   61 QSYFTEEKPV YGPIPPSDPA QAWPQTNGYD AIQAQMVAAG YQGEWSGYQY GEQQMPYPEQ 120
  121 YMQQSTQDYD VLADPNIAQD PRLMTQADKD RGLGSVFKRD DERLKQLREK DSREKD

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [407-536]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNFISDSYSE CYPGYQEYNH EIAGSDEEDD LSKMDMGGRA KGRLHRWDFE TEEEWAKYND  60
   61 QKEAMPKAAF QFGVKMQDGR KTRKQNKDQK LTNDLHKINK ILARKKGDKD GGDDGGHYDD 120
  121 DLPSGKKQRA 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 65.958607
Match: PF07807.2
Description: No description for PF07807.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle